Pairwise Alignments

Query, 409 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 371 a.a., branched-chain amino acids ABC transporter - periplasmic leucine binding subunit from Pseudomonas putida KT2440

 Score =  112 bits (279), Expect = 2e-29
 Identities = 92/337 (27%), Positives = 148/337 (43%), Gaps = 15/337 (4%)

Query: 6   KLLALTSALAFSMGALAADPIKIGVDGPFTGGSSSMGVSMRDGVRLAAEEINKSGGVLGR 65
           KL A       +  + AAD IKIG+ GP TG  +  G     G + A ++IN +GGV G+
Sbjct: 6   KLFAAMVLAGVASHSFAADTIKIGIAGPKTGPVTQYGDMQFIGAKQAIKDINAAGGVDGK 65

Query: 66  QIQLIERDDEAKNERGVQIAQEFVNKEKVVAAVGYINTGVALASQRFFQDAKIPVLNNVA 125
            ++  E DD    ++ V +A + VN + V   VG++ +     +   ++D  + ++   A
Sbjct: 66  MLEAKEYDDACDPKQAVAVANKVVN-DGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAA 124

Query: 126 TGSVITHQFDKDPENYVFRNAAHDSIQAPMIVEEAITRRGYKKVAILADSTNYGQLGRED 185
           T   IT +  K     +FR    DS Q P            K VA+L D   YG+     
Sbjct: 125 TSPEITARGYK----LIFRTIGLDSAQGPAAGNYIADHVKPKVVAVLHDKQQYGEGIATA 180

Query: 186 LERALKNKGITPVAVEKFNIKDVDMTAQLLKSKEAGAEAVLTYGIGPELAQIANGMTKLG 245
           +++ L++KG      E  N  D D ++ + K K+   + V   G  PEL  I     + G
Sbjct: 181 VKQTLESKGTKVAVFEGLNAGDKDFSSIIQKLKQNNVDFVYYGGYHPELGLILRQAQEKG 240

Query: 246 WKVPIIGSWTLAMANFIDNAGPGGDG--ARMPQTFIQEPTNPKRKAFIDAFVGKFKPKNN 303
            K   +G   +   +    A    +G    +P++F  +P N   K  +DA     K  + 
Sbjct: 241 LKAKFMGPEGVGNDSISQIAQNASEGLLVTLPKSFDADPAN---KKIVDAIKADGKDPSG 297

Query: 304 RMDSPVSAAQGYDSIYLLAAAIKQAGSTDGPKIKAAL 340
               P      Y ++ L+A  IK+AGS D  K+  A+
Sbjct: 298 PFVFP-----AYSAVELIAQGIKKAGSDDTDKVAEAI 329



 Score = 24.3 bits (51), Expect = 0.006
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 307 SPVSAAQGYDSIYLLAAAIKQAGSTDG--------PKIKAALEDLQAPVEGVVT 352
           SP   A+GY  I+         G   G        PK+ A L D Q   EG+ T
Sbjct: 126 SPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKVVAVLHDKQQYGEGIAT 179