Pairwise Alignments

Query, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 303 a.a., peptide transporter from Pseudomonas simiae WCS417

 Score =  219 bits (558), Expect = 6e-62
 Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 20/304 (6%)

Query: 9   PVASASQPAARPPVRVEHPGMEALRMFLRNPAAIAGMAMLLIVLAVAIAGPWVYPADPFE 68
           PV++  Q    P      P  E  + F +N  A+AG+  +L+++  AI  PWV P +P E
Sbjct: 6   PVSAVDQSLLYPS-----PYKEFWQAFSKNKGAVAGLLFMLLIVFCAIFAPWVAPHNPSE 60

Query: 69  -IKAAPLTPPFSEDAWL---------GSDYLGRDVLTALIYGGRATLLVGAVAALLSVLI 118
             +   LTPP    AWL         G+D LGRD+L+ LI G R +LL+G  + ++S++ 
Sbjct: 61  QYRDFLLTPP----AWLEGGQMQFLLGTDELGRDLLSRLIQGSRLSLLIGLSSVVMSLIP 116

Query: 119 GITLGAFAGYYGGKIDAALMKLTEFFQVLPALLFAMVVVTLFSPTLVTVTLAIGIVSWTG 178
           GI LG FAG++   +   +M+L +    LP+LL A+ +V +  P L+   +AI IVS   
Sbjct: 117 GILLGLFAGFFPRLLGPTIMRLMDIMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPS 176

Query: 179 TARLTRAEFMKYRGLEFVRAERAIGAGDARIIWKVILPNALPPLVVSATLAIGAAILFEA 238
             RLTRA  M     ++V A R  GAG  R+++  +LPN + PL+V ATL+  +AIL  A
Sbjct: 177 YVRLTRAAVMGELNRDYVTAARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAA 236

Query: 239 GLSFLGLG-DPNQMSWGLMIGSSRQYVLSCWWAVAFPGAAIFITVLAVSLIGDGLNDALN 297
            L FLGLG  P    WG M+ S+R Y+   WW V+ PG  I ++VLA++L+GDGL DAL+
Sbjct: 237 ALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALD 296

Query: 298 PKLR 301
           PKL+
Sbjct: 297 PKLK 300