Pairwise Alignments

Query, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 335 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  238 bits (608), Expect = 1e-67
 Identities = 130/334 (38%), Positives = 197/334 (58%), Gaps = 14/334 (4%)

Query: 6   LLRHAASRLLQALGLVLAVVVLNFVLVHAAPGDPVETIAGASGGMSPELMAQLRTQYGLD 65
           ++R    +LL  +   L + ++ F  V   PGDPV  +AG  G +SPE  AQL  Q G  
Sbjct: 1   MIRFIFGKLLYLVPTFLGITIVAFAFVRVLPGDPVLLMAGERG-ISPERHAQLAEQLGFA 59

Query: 66  KSLPVQLAVYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGV 125
           + +  Q   +LG++ QGDLG S     PV        PAT+ L L ++++A   G  +GV
Sbjct: 60  QPIWEQYLHFLGRLLQGDLGNSLVTKKPVLTEFLALFPATVELGLVAIIIATVIGVPVGV 119

Query: 126 LSSRKPNGWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAGMRS--------- 176
           +++ +   W  Q     +LVGF+ P+FW G++L+I+ + +    PV+G  S         
Sbjct: 120 IAAIRRGSWFDQISMTTALVGFSMPIFWWGLLLIIMFSGILQWTPVSGRISLMYFFPSVT 179

Query: 177 ----IDSTGAGGFADMLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARA 232
               IDS  +G          HL+LP++ L+ + LA  +R  RS+ML+VLG D++RTARA
Sbjct: 180 GFMLIDSLISGQKGAFASALSHLILPSVVLATIPLAVIARQTRSAMLEVLGEDYVRTARA 239

Query: 233 KGLADRVVLYKHALRNALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRD 292
           KG++   V+  HALRNA++PV+T +GLQ G ++AGAIL ET+F+WPG+G+   +S+ RRD
Sbjct: 240 KGMSASRVVGIHALRNAMIPVITTIGLQIGVLMAGAILTETIFSWPGIGKWMIDSISRRD 299

Query: 293 YPTILGVLLFSSIVVVVMNQLTDLCYRFIDPRIK 326
           YP +   LL  + +V+V+N L DL Y  I+PRI+
Sbjct: 300 YPVVQSGLLLIAGLVMVVNLLVDLTYGLINPRIR 333