Pairwise Alignments

Query, 537 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  116 bits (291), Expect = 2e-30
 Identities = 133/546 (24%), Positives = 236/546 (43%), Gaps = 71/546 (13%)

Query: 13  RRATLLSASFAAAGTLLPLSVFAAAEPKRGGTLVIGSTQTPRHLNGAVQSGIATAMPSTQ 72
           R  T+LSA FA +  LL ++    A  KR  +LV  S  +P   + A  +       +  
Sbjct: 2   RHTTVLSAMFATS--LLAVATMGHAADKR--SLVFCSEGSPAGFDTAQYTTATDNDAAEP 57

Query: 73  IFASPLRFDD-KWNPQPYLAESWKLADDGKSLTLKLRKDALFHDGKPV------TSADVA 125
           ++   + F+  +    P LA  W ++ DG + T  LR+   FH  K         + DV 
Sbjct: 58  LYNRLVEFEKGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVL 117

Query: 126 FSI-LAIKANHPFT-------------TMMGPVEKVDTPDAYTAVVRMSVPHPAIVLAMS 171
           F+    +  +HPF              ++   + KV+  D +T V+ ++    A +  ++
Sbjct: 118 FTFNRMLDPDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIA 177

Query: 172 PALCPILPKHIY------GDGQDLKNHPRNTTDVIGSGPYRVTDFKPAQRVVLERFDKFF 225
            +   IL           G   D+   P      IG+GP+    ++   ++      +++
Sbjct: 178 MSFAAILSAEYAEQLLKAGKPSDINQKP------IGTGPFVFQRYQKDSQIRYVANKQYW 231

Query: 226 IPGRPYLDKIIINITPDSASLMLGLERGDIQMVPFATLPTDLKRLANDPKMSLTPK-GYD 284
            P R  LD++I  I  D++  +  L+ G+ Q V     P D+  L  DP + L  K G++
Sbjct: 232 DPSRVKLDQLIFAINTDASVRVQKLKAGECQ-VTLHPRPADVDALKADPNLKLLTKPGFN 290

Query: 285 GIGALNWLAFNTAKKPLSDVQVRKAIATAIDKNFITKAL---MGGFATVSDGPLVASSPF 341
               L ++A+N   KP   ++VR+A+  A++K  I  A+    G  A  +  P   S   
Sbjct: 291 ----LGYIAYNVRHKPFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDD 346

Query: 342 AVPDLVRYPLDLKKAGEMLDAAGYKAGAGGERFKLTIDYLP---GVDDQQKNVAEYIRGQ 398
           ++ D    P   +KA E+L AAG K G      ++T+  +P     +   K +AE ++  
Sbjct: 347 SIKDAAYNP---EKAKELLKAAGVKEGT-----EITLWAMPVQRPYNPNAKLMAEMLQSD 398

Query: 399 LKKVGITVEVRASADFPAWAKRLASHDFDMSMDTVFNW----GDPIIGVHRTYLSTNIKP 454
             K+G+ V++  S ++  + KR  + + D+S+     W    GDP   +   Y   +   
Sbjct: 399 WAKIGLKVKI-VSYEWGEYIKRTKNGEHDVSL---IGWTGDNGDPDNWLGTLY---SCDA 451

Query: 455 IVWTNTQSYANPKVDELLNTAGGLIDATQRKAYYATFQKIVTDELPIEFINQVPYHTVSS 514
           I   N   + +P  D+L+  A  + D  QR   Y   Q+++  ++P   I  V + TV+ 
Sbjct: 452 IGGNNYSMWCDPAYDKLIKQAKVVTDREQRTVLYKQAQQLLKQQVP---ITPVAHSTVNQ 508

Query: 515 KKVANV 520
              A V
Sbjct: 509 PLSAKV 514