Pairwise Alignments

Query, 537 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 502 a.a., dipeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  115 bits (288), Expect = 4e-30
 Identities = 107/449 (23%), Positives = 193/449 (42%), Gaps = 38/449 (8%)

Query: 88  PYLAESWKLADDGKSLTLKLRKDALFHDGKPVTSADVAFSILAIKANHPFT-----TMMG 142
           P LA  W  ++ GK LT+K+R    FHDG+ + +A V   +  I+ N         + + 
Sbjct: 69  PQLATEWAWSEGGKVLTMKIRDGVKFHDGETLDAAAV---VATIERNMTLPESRRKSELS 125

Query: 143 PVEKVDTPDAYTAVVRMSVPHPAIVLAMSPALCPIL-PKHIYGDGQDLKNHPRNTTDVIG 201
            VEKV+          +  P   ++  +S     I+ PK     G +  + P      + 
Sbjct: 126 SVEKVEATGPLDVKFTLKTPDVTLLAQLSDRAGMIVAPKAAKELGANFGSKP------VC 179

Query: 202 SGPYRVTDFKPAQRVVLERFDKFFIPGRPYLDKIIINITPDSASLMLGLERGDIQMVPFA 261
           +GP++  +     R+VLE+F  ++   +  +DKI+    PD+   +  L  GD+ +    
Sbjct: 180 AGPFKFVERIQQDRIVLEKFADYWDKDKILVDKIVYLPIPDTTVKLANLRAGDLDIAERI 239

Query: 262 TLPTDLKRLANDPKMSLTPKGYDGIGALNWLAFNTAK--KPLS-DVQVRKAIATAIDKNF 318
           +  +D + + NDPK++       G  A+     N A+   PL  D ++R+A + AID+  
Sbjct: 240 SA-SDAESVKNDPKLTYADVIGPGYMAMYVNINNGARADNPLGKDKRLRQAFSYAIDREA 298

Query: 319 ITKALMGGFATVSDGPLVASSPFAVPDLVRYPLDLKKAGEMLDAAGYKAGAGGERFKLTI 378
           I + +  G +   +     +SP+   +L     D+ KA +++  AGY+         L +
Sbjct: 299 IGQIVFEGTSKAGNQSFPPTSPWFNQNLPVPTRDIDKAKQLMKEAGYET--------LDV 350

Query: 379 DYLPGVDDQQKNVAEYIRGQLKKVGITVEVRASADFPAWAKRLASHDFDMSMDTVFNWGD 438
           +     +  Q  + + I+  + + G  V ++A+ +F        + ++ +S        D
Sbjct: 351 ELQHANNTTQTQMMQVIQSMVAEAGFNVTLKAT-EFATLLSEQTAGNYQLSRSDWSGRID 409

Query: 439 PIIGVHRTYLSTNIKPIVWTNTQSYANPKVDELLNTAGGLIDATQRKAYYATFQKIVTDE 498
           P   +H+             N   Y NP+VD+LLN A    +   RK  Y     I+ D+
Sbjct: 410 PDGNLHQFVTCKG-----GINDVKYCNPEVDKLLNEARASTEDAVRKEKYDAASVILNDD 464

Query: 499 LPIEFINQVPYHTVSSKKVANVPTTIWGP 527
           +PI ++   PY    S KV       W P
Sbjct: 465 MPIIYLGHQPYAYAISNKVKG-----WAP 488