Pairwise Alignments

Query, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  131 bits (329), Expect = 2e-35
 Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 16/303 (5%)

Query: 3   ILTQLIFSGIALGMIYAVIAFGYQLTFATSDTLNFGQGNALMLGAMVGLT----LVNMGL 58
           I  Q + +G+ LG +Y +IA GY + +     +NF  G   M+ A +       L   G+
Sbjct: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGV 63

Query: 59  NYWLMIPL------VCLFGAFQGAVVERIAVRPAIKIKSEFGWIMSTIALGIIFTNVAEN 112
             + ++ L      + + G + G  +ERIA +P ++  +    ++S I + +I  N A+ 
Sbjct: 64  ESFPLLMLGTLLFTIVVTGVY-GFTIERIAYKP-LRNSTRLAPLISAIGISLILQNYAQI 121

Query: 113 VWGRDDLKFPSPLPESPLHFLGANVLPM---EILVVIGALLMMLAVELFNRRSIYGKAVV 169
             G      P+ L  +    +G+  + +   +I +++ A + M  +    + +  G+   
Sbjct: 122 SQGARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCR 181

Query: 170 ATFNDRDAAKLMGINTGLVITFSYALSSMTAAFAGVLIAPLTLT-GASMGAVLGLKAFAV 228
           AT  DR  A ++GINT  VI++ + + ++ AA AGVLI     T     G ++G+KAF  
Sbjct: 182 ATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTA 241

Query: 229 AIIGGLTSGMGIVVGGIILGIAETTTGFYLSTGYKDVPGLVLLLIVLAVRPSGLFGKAAI 288
           A++GG+ S  G ++GGIILGI+E+     +++ YKDV    LL+++L  RP GL G+  +
Sbjct: 242 AVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGRPLV 301

Query: 289 KKV 291
            KV
Sbjct: 302 AKV 304