Pairwise Alignments

Query, 364 a.a., Flagellar biosynthesis protein FlhB from Variovorax sp. SCN45

Subject, 365 a.a., type III secretion system protein from Pseudomonas simiae WCS417

 Score =  149 bits (376), Expect = 1e-40
 Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 13/343 (3%)

Query: 7   DRNEAATPYKLQRARERGQAAKSTDVVGAIVFTVAAVYLTWRGFGAVATQFRFDQAVLIQ 66
           ++   A+  KL+  R++GQ A+S DV   +  T  +       F A  +  RF Q +L+ 
Sbjct: 6   EKKHPASAKKLRDQRKKGQVAQSQDVAKLLALTAISEIAL---FTAETSLQRFQQLMLLP 62

Query: 67  AGRMD-PSGAGLWPLTERALRAVFVLSAPFFATVMLAAVVGNMMQTGPMLSFDPVKMDFN 125
             R++ P    L  +    L   F  +       +   ++ + MQ G + + + +KMDFN
Sbjct: 63  ISRLNQPFTRALEEVLFDGLGVFFSFALLMVGVAITTKLISSWMQFGLLFAPEALKMDFN 122

Query: 126 RINPVNGLKRLFSMRVLFDTARALIKLTLLGLVSVLALKALLGQFYGLASLSPIGY---L 182
           R+NPV+ +K++FS + L +   ++ K  L+GL+  + ++  +G    LA+     Y   L
Sbjct: 123 RLNPVSQVKQMFSAQQLMNLLMSVTKAFLIGLILYVVIRPSVGTLINLATSDLQSYIVAL 182

Query: 183 RTLLDDLSSVALKMALVLGLIALLDLMYTRREFAKKMRMSQRDIKDEAKHRDGDPRIRAR 242
             L   L  V L M LVL   AL+DL+ ++  FAK+MRM+Q ++  E K  +GDP ++ +
Sbjct: 183 IALFRHLLHVCLGMLLVL---ALVDLILSKHFFAKRMRMTQVEVVKEYKDMEGDPHVKGQ 239

Query: 243 LRELRRETLKR--SLALRETRNADVLITNPTHFAVALKYDHGRMVSPQLLAKGSGHMAAA 300
            R L  +  +    + L +   +D+L+ NPTHFAVAL Y  G+   P L++KG+   A  
Sbjct: 240 RRSLAYQLAQEEPKVKLPKLEESDMLVVNPTHFAVALYYRPGKTPLPMLVSKGTDDEARK 299

Query: 301 MREIAARHGIPVVQNPPLARRLYRELPVDQAVPPELYAQVARI 343
           +   A    +PV+Q   LAR LY +  +  ++P E    VA I
Sbjct: 300 LIRRAKAADVPVIQCVWLARTLYTK-KLGASIPRETLQAVALI 341