Pairwise Alignments

Query, 703 a.a., Flagellar biosynthesis protein FlhA from Variovorax sp. SCN45

Subject, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

 Score =  327 bits (838), Expect = 1e-93
 Identities = 231/712 (32%), Positives = 374/712 (52%), Gaps = 56/712 (7%)

Query: 4   LAKVFEKHSDIALVLLVLGVLVVLFAPIPSGLLDFLILTNFSFAFLVLLLTFYMARPVEF 63
           L KV ++ +++   ++V+ ++ +   P+P+ L+D LI  N   + L+++L  Y+  P+ F
Sbjct: 11  LLKVAQR-AEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYLPGPLAF 69

Query: 64  STFPSLLLIATLFRLSLNVAATRLILSDGDAGRVIGAIGAFVVGGNYVIGLIVFLILIVV 123
           S+FPS+LL+ T+FRL+L++A TRLIL + DAG ++ A G FVVGGN  +G+++FLIL +V
Sbjct: 70  SSFPSILLLTTMFRLALSIATTRLILLEQDAGHIVEAFGNFVVGGNLAVGMVIFLILTLV 129

Query: 124 QYVVVTSGAQRVSEVAARFTLDSMPGQQMSIDADLNMGFIDQAEAQRRRKNIEKEAGFYG 183
            ++V+T G++RV+EVAARF+LD+MPG+QMSID+DL  G ID  +A+ +R+ + +E+  +G
Sbjct: 130 NFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSRESQLFG 189

Query: 184 AMDGASKFVKGDAIAGIIILLINIIGGLVIGVMQHGLPWGQALQTYTLLTIGDGIVTQVP 243
           AMDGA KFVKGDAIAG+II+++N++GG   G+ QHGL   +++  Y++LTIGDG++ Q+P
Sbjct: 190 AMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDGLIAQIP 249

Query: 244 ALVIAVGTGIIVTRSSSD-----TNLSREALRQVSSFPKTLLMVALALGGLLVLPGIPAI 298
           AL+I++  G+I+TR + D     +N+  E  RQ++S PK+ ++ ++   G+L    +P +
Sbjct: 250 ALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASV---GMLAFAVVPGM 306

Query: 299 PTLVLTAGFLLAATLLY--RAAKVKSDNAAQGMGDPIDPENLAAADGTAAAAASDDPYTL 356
           PT V     L+  +L Y     + + +  A    + + PE   + D          PY L
Sbjct: 307 PTGVFILIALVTGSLGYYLMRQRQRQEQPAAETAEAVRPEENGSED--LRGFDPSRPYLL 364

Query: 357 LQVEPVEVHLGGNWGPVINQPGSV--FMERIASFRKQHANEFGLVLPRVRFKDSSRLSAD 414
                        + PVI     V   +  I   R       GL LP    +    L+ D
Sbjct: 365 ------------QFSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADD 412

Query: 415 R-----YEIHLDGVLVGKGEARADRLLAIHPSGDTKSIPGEPTRDPTYGLPALWI--EER 467
                 +E+ +    V    A   + L++ P+    +I G   RD       LW+  ++ 
Sbjct: 413 EMRFCVHEVPMVKASVVSHVAVERKALSVEPA---HAIAGLVERDEQ---DWLWLAPDDP 466

Query: 468 QREAAAQAKFTLVDAPTVFMTHLTEMLRRESATLLTRSEVDRLLSRVRKSQPGLVEELIP 527
             +     +FT   A ++ +  + + +       L   E   +LS +  +QP LV+EL  
Sbjct: 467 LLDDPQLERFT---AASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQEL-Q 522

Query: 528 TVLSASDVQKVLQNLLREKVSIRHVEAILETLADAGRATRDTAQLTEIVRQRLGHAICQG 587
            ++  S    VLQ L  E V +R V  I+E+L + G+  R+   L +  R  L   I   
Sbjct: 523 RIMPLSRFSAVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYH- 581

Query: 588 LIGEASALQVLTLDPAIESQFLQSMQIAVGEAGATTAAGTQPFVIDPRLSEQLIKRLVQQ 647
              EA  L    L P  E+         + EA   T  G   F +D   S  L+  L Q 
Sbjct: 582 QYSEADGLHAWLLSPQTEN--------ILREALRQTQTGVF-FALDDEHSAVLVSLLNQA 632

Query: 648 AERMMKSNLLPVLLCAPELRRHVRGLSERVMPHLRVLSMAEVPHTIELKSFG 699
               ++  L  V+L A +LR  +R L      H+ VLS AE+    ++K  G
Sbjct: 633 FP--VRPKLKSVMLVAQDLRSPLRTLLLEEFNHVPVLSFAELGSASKVKVLG 682