Pairwise Alignments

Query, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score = 76.3 bits (186), Expect = 5e-19
 Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 14  DVEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQIALSM 73
           +V+ ED +Q   IGL+E  +++D  +GA F+T+A  R++GA+L+ + +     + +  + 
Sbjct: 42  NVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNT 101

Query: 74  RLRRERLEAVKDAAAQAAPGAAQGTDSPPSGRQPEELFRYLAEVGIGLALSVMLEDTGMI 133
           R+  + + AV+    + A       D   +      L  Y   +   L   +   D  + 
Sbjct: 102 RMVSDAMRAVEARTGRDAK------DHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQ 155

Query: 134 DSGAPGDTGQLPSPEVSYFRQSEIAQLRSVLRNLVDRLGEQQRMVIHQHYLQEVPFEEIA 193
           D    G      S +V   R  E  + ++ L   +  L E++R+V+  +Y +E+  +EI 
Sbjct: 156 DGEHEGLHEDGASGQVEPARGLEEERFQAALTEAIANLPERERLVLALYYDEELNLKEIG 215

Query: 194 RRVGLTRGRVSQLHRQALGRLRELLGK 220
             +G++  RVSQLH Q   RLR  LG+
Sbjct: 216 EVLGVSESRVSQLHSQCAARLRSRLGE 242