Pairwise Alignments

Query, 480 a.a., Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 529 a.a., Cytochrome c oxidase subunit 1 from Pseudomonas putida KT2440

 Score = 72.4 bits (176), Expect = 4e-17
 Identities = 58/257 (22%), Positives = 113/257 (43%), Gaps = 16/257 (6%)

Query: 160 IYVANWFYGAFIIAVALLHIVNGAV----VPAGWMKSYSAYAGVQDAM----VQWWYGHN 211
           ++V  W   AF++ +A++ ++ G V    +   +  S+ + AG  D +    V W++GH 
Sbjct: 200 LFVWTWLITAFLL-IAVMPVLAGVVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHP 258

Query: 212 AVGFFLTAGFLGMMYYYIPKQAGRPVYSYRLSIVHFWALIFTYMWAGPHHLHYTALPDWT 271
            V   +   F G +   IP  + +P++ Y   +    A+ F       HH+    +P   
Sbjct: 259 EVYIMILPAF-GAVSSIIPAFSRKPLFGYTSMVYATGAIAFLSFIVWAHHMFVVGIPVVG 317

Query: 272 QSLGMVFSLILLAPSWGGMINGVMTLSGAWH-KLRTDPILRFLIVALSFYGMSTFEGPMM 330
           +   M  ++++  P+   + N V T+   W   L  +  + F I  +  + +  F G M+
Sbjct: 318 ELFFMYATMLIAVPTGVKVFNWVSTM---WEGSLTFETPMLFAIAFVILFTIGGFSGLML 374

Query: 331 SIKTVNALSHYTDWTIGHVHSGALGWVGFISMGSLYYLIPRMYGRTAMYSTRAIEVHFWI 390
           +I   +   H T + + H H   +    F    S YY +P+  G   MY     ++HFW+
Sbjct: 375 AIAPADFQYHDTYFVVAHFHYVLVPGAIFGIFASAYYWLPKWTGH--MYDETLGKLHFWL 432

Query: 391 ATIGIVLYIAAMWIAGV 407
           + +G+ +    M   G+
Sbjct: 433 SFVGMNMAFFPMHFVGL 449



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 362 MGSLYYLIPRMYGRTAMYSTRAIEVHFWIATIGIVLYIAAMWIAGVMQGLMWRSINPDGT 421
           +G   ++IP M G   M   R     FW+     +L ++ ++  G      W    P  T
Sbjct: 94  VGLANWMIPLMIGAPDMALPRMNNFSFWLLPAAFLLLVSTLFSPGGGPNFGWTFYAPLST 153

Query: 422 LTYTFVESVKATFPFYLVRVIG 443
            TY        TF  + + ++G
Sbjct: 154 -TYA---PASVTFFIFAIHLMG 171