Pairwise Alignments

Query, 480 a.a., Cytochrome c oxidase (cbb3-type) subunit CcoN (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 632 a.a., Heme/copper-type cytochrome/quinol oxidases, subunit 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 67.4 bits (163), Expect = 1e-15
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 206 WWYGHNAVGFFLTAGFLGMMYYYIPKQAGRPVYSYRLSIVHFWALIFTYMWAGPHHLHYT 265
           W+ GH  V   L    LG+    I   + +P++ Y+  I+    +         HH+  +
Sbjct: 291 WFLGHPEVYIVLLPA-LGITSEVIATNSRKPIFGYKAMILSMLGITVLSFVVWAHHMFVS 349

Query: 266 ALPDWTQSLGMVFSLILLAPSWGGMINGVMTLSGAWH-KLRTDPILRFLIVALSFYGMST 324
            +  +  S+ M  +LI+  PS   + N + TL   W   L   P + F I  +SF+    
Sbjct: 350 GMNPFLGSIFMFLTLIIAVPSAVKVFNYLTTL---WRGNLVFTPAMLFSIGLVSFFISGG 406

Query: 325 FEGPMMSIKTVNALSHYTDWTIGHVH--SGALGWVGFISMGSLYYLIPRMYGRTAMYSTR 382
             G  +    V+   H T + + H H   G+  + G   M  +Y+  P+M+G+  M   +
Sbjct: 407 LTGIFLGNSAVDIQLHDTYFVVAHFHLVMGSASFFGL--MAGVYHWFPKMFGK--MMDAK 462

Query: 383 AIEVHFWIATIGIVLYIAAMWIAGV 407
              +HFW+  +G+ +    M   G+
Sbjct: 463 LGYIHFWLTFVGVYMVFFPMHYIGI 487



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 8/32 (25%), Positives = 21/32 (65%)

Query: 18 RQFALMSVVWGVVGMLVGVVIASQLTWPELNL 49
          +QF +  +VW ++G  + ++   QL +P++++
Sbjct: 42 KQFLVTGIVWALIGGFLSILFRLQLGFPDMDM 73



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 22/120 (18%)

Query: 367 YLIPRMYGRTAMYSTRAIEVHFWIATIGIVLYIAAMWIAGVMQGLMWRSINPDGTLTYTF 426
           YLIP   G   M S     + +W+  I  V+   +++I     G  W    P   L    
Sbjct: 122 YLIPLQIGARDMASGFMNMLSYWLFFIAGVIMFISLFIETGPAGGGWVIYPPLSALEQAI 181

Query: 427 VES--------VKATFPFYLVRVIGGVLYLSGML-------------LMAWNFWMTVISG 465
             S        V   F F   +++GG+ Y++ ++             L  W+F++T + G
Sbjct: 182 PGSGLGMTLWLVSMVF-FIASQLMGGINYITTVINLRTRGMSFSRLPLTIWSFFLTAVIG 240