Pairwise Alignments

Query, 305 a.a., Cytochrome c oxidase (cbb3-type) subunit CcoP (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 325 a.a., cytochrome Cbb3 from Pseudomonas simiae WCS417

 Score =  237 bits (604), Expect = 3e-67
 Identities = 133/325 (40%), Positives = 195/325 (60%), Gaps = 27/325 (8%)

Query: 5   ISRFWSNYVAVISLLSILGCVILLWLTARKRVAPSADNTTGHVWDGDLREANNPLPMWWV 64
           ++ FWS YV V+SL +I     LL  T + + A   D T GH +DG + E +NPLP WW 
Sbjct: 1   MTTFWSLYVTVLSLGTIFALTWLLLSTRKGQRAEQTDETVGHSFDG-IEEYDNPLPKWWF 59

Query: 65  GLFVLTIVFGLGYLAVFPGLGSFRG-------------------QSDWTSRGEYEAEVAK 105
            LFV TI+F LGYLA++PGLG+++G                   Q+ WT   E+E E+AK
Sbjct: 60  MLFVGTIIFALGYLALYPGLGNWKGLLPGYSYLDNDKQTPFANGQTGWTGVHEWEKEMAK 119

Query: 106 ATQELAPVYAKYTAMPVEEIARDPQAHAIGERLFMGNCAQCHGSDARGSKGFPDLTDKDW 165
           +  +  P++AK+ +MP+EE+A+DPQA  +G RLF  NC+ CHGSDA+G+ GFP+LTD DW
Sbjct: 120 SDAKFGPIFAKFASMPIEEVAKDPQALKMGGRLFASNCSVCHGSDAKGAYGFPNLTDADW 179

Query: 166 LYGGTPERITESITKGRVGVMPPMAAAVGTSDDVKNVANYVL-SLSGEP-HDSVRAGL-- 221
            +GG P  I E+I KGR  VMP     +     V +VA +V+ +L G    + V+A +  
Sbjct: 180 RWGGEPATIKETIMKGRHAVMPAWLDIL-KEQGVSDVAAFVVTNLDGRKLPEGVKADVAN 238

Query: 222 GKSKFTV-CVACHGVGGVGNQTLGAPNLSDK-IWLHGYGEAAIIQMINSGKRNEMPAQER 279
           G+  F   CVACHG  G G   +GAP+L+    +++G   A + Q I  G++ +MPAQE+
Sbjct: 239 GEKLFAANCVACHGPAGKGTPAMGAPDLTHPGAFIYGSSFAQLQQTIRWGRQGQMPAQEQ 298

Query: 280 RLTEAQIRMVASYVWGLSNSTAAAK 304
                ++ ++A+YV+ LS+    A+
Sbjct: 299 LQGNDKVHLLAAYVYSLSHGDKKAE 323