Pairwise Alignments

Query, 499 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 511 a.a., Antibiotic efflux pump outer membrane protein ArpC from Xanthobacter sp. DMC5

 Score =  342 bits (878), Expect = 1e-98
 Identities = 193/475 (40%), Positives = 276/475 (58%), Gaps = 3/475 (0%)

Query: 23  LSAGCMVGPDFVRPAPAQVDSYTRGALPATTEAGD---GRSQRFGPAAELPADWWRLFGS 79
           L  GCMVGPDF  P   +V  Y     P  T + D   GRSQ F    +LP +WWR+F +
Sbjct: 25  LMNGCMVGPDFEAPDAPRVSGYLPEGTPRPTTSADVHGGRSQAFLRGRDLPGEWWRVFRN 84

Query: 80  PALDEAVRQALQHNPTLQSAEASLRQSQDELRAGHGIFYPQLDASFGATRARTAPVLQGS 139
             +D  V +A++++P + +A+A+LR +++   AG G  +PQ+ A+  ATR  T+   QG 
Sbjct: 85  KQIDAFVAEAIRNHPDIAAAQAALRAARENALAGEGSLFPQVSANGSATRQVTSLASQGE 144

Query: 140 SAAGTIYQVVTLSGAISYPLDVFGGERRTVEGLAAQAENQRFVAMAAYLALEANLVQTCV 199
           S     Y +   S ++SY LDV+GG RR VE L AQA+ QRF   A YL+L AN+V   +
Sbjct: 145 SGNTNPYNLYNASVSVSYVLDVWGGTRRNVEALEAQADYQRFQLEATYLSLTANVVTAAI 204

Query: 200 ARAAYVAQRRTTEELIALERDQLHSIEAQVHAGTVPYANQLSQLSLIASNRAQLAALAQK 259
             A+  AQ   T ++I  E++QL  ++ Q   G V  ++ LSQ S +A  +A L  L ++
Sbjct: 205 TDASLRAQIEATNDIIKSEQEQLKLVQRQFELGAVAQSDVLSQQSNLAQTQATLPPLQKQ 264

Query: 260 ISQADHLLAALQGDTPAEAALPDVDIGELTLPRDLPLSLPSELVRQRPDILAAEAQLHAA 319
           ++Q  + L A  G  P++     V +  LTLPRDLP+S+PS LVRQRPDI AAEA LH A
Sbjct: 265 LAQQRNQLMAYLGRLPSQDRGEHVTLASLTLPRDLPVSVPSALVRQRPDIGAAEASLHKA 324

Query: 320 SAAIGVATAAMFPSFSLSAGYGAASPQLASLLAGGSRYWSLAPAVALPLLHGGTLRARRQ 379
           +A +GV  A M P   L+  YG A     SL + G+  WS+A +VA  +  GGTL   ++
Sbjct: 325 TATVGVNVANMLPQVQLTGSYGRAGLTPDSLFSPGTAAWSIAGSVAQTVFDGGTLYHDKE 384

Query: 380 AAIDAHAAREADYRQTVLSAFEQVADALRALEHDAQALQAQAEARSSAADALALQQAGYR 439
           +A+ ++    A Y+ TV++AF  VAD+LRA+E DA  L+AQ     +A +++ + +  Y 
Sbjct: 385 SAVASNEQALAQYKSTVITAFRDVADSLRAIEADASTLKAQLAYEKAAQESVKISRTQYL 444

Query: 440 AGLVAYVDLQNADIQFHAASLSYLSALAQRHQDTVALFAALGGGWWNAPSSGAGA 494
           AG V Y  +  A+  F  A ++ + A A R  DT ALF ALGGGWWN     A A
Sbjct: 445 AGAVTYPSVLTAEQNFQQAVVARVKAQAARFTDTAALFQALGGGWWNRVDQTAQA 499