Pairwise Alignments

Query, 499 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 472 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  184 bits (467), Expect = 6e-51
 Identities = 148/483 (30%), Positives = 226/483 (46%), Gaps = 22/483 (4%)

Query: 7   PGWRWLAAVLALAGTGLSAGCMVGPDFVRPAPAQVDSYTRGALPA--TTEAGDGRSQRFG 64
           P  + LAA++ LA      GC + P +  PA   VD      LPA    +  DG      
Sbjct: 3   PRLKPLAALMLLA----LQGCSMAPTYQVPA---VD------LPAGYREQTSDGPWHSAQ 49

Query: 65  PAAELPADWWRLFGSPALDEAVRQALQHNPTLQSAEASLRQSQDELRAGHGIFYPQLDAS 124
           P+ +L  +WW L+    L++  +Q L+ NP L +A A    SQ      H   +PQ+ AS
Sbjct: 50  PSDQLAPEWWTLYNDSRLNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISAS 109

Query: 125 FGATRARTAPV--LQGSSAAGTIYQVVTLSGAISYPLDVFGGERRTVEGLAAQAENQRFV 182
               R R +    L+G +   ++Y   T   ++SY LD++G  R  V    AQA+     
Sbjct: 110 AQPLRQRQSDSRPLRGDTQP-SVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDD 168

Query: 183 AMAAYLALEANLVQTCVARAAYVAQRRTTEELIALERDQLHSIEAQVHAGTVPYANQLSQ 242
              A L+L+  L    V      AQ R  +  +   R  L    ++         +    
Sbjct: 169 LAVARLSLQHQLATLYVQLNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRA 228

Query: 243 LSLIASNRAQLAALAQKISQADHLLAALQGDTPAEAAL-PDVDIGELTLPRDLPLSLPSE 301
            + +A  +AQ   +  + +  +H +  L G   ++ +L P   +  ++LP  +P  LPS 
Sbjct: 229 QNQLAEAKAQWDEIRGQRNLTEHAIGELVGVAASDFSLSPSPQL--ISLP-GIPSQLPSH 285

Query: 302 LVRQRPDILAAEAQLHAASAAIGVATAAMFPSFSLSAGYGAASPQLASLLAGGSRYWSLA 361
           L+++RPDI AAE ++ AA+A IGVA AA +P FSL+   G  +  + +LL+ G+RYW+L 
Sbjct: 286 LLQRRPDIAAAERRVFAANANIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALG 345

Query: 362 PAVALPLLHGGTLRARRQAAIDAHAAREADYRQTVLSAFEQVADALRALEHDAQALQAQA 421
           P V LP+  GG L A  + A        A YR  VL A  +V D L  L    Q  Q + 
Sbjct: 346 PLVNLPIFDGGRLSANERQAKAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQ 405

Query: 422 EARSSAADALALQQAGYRAGLVAYVDLQNADIQFHAASLSYLSALAQRHQDTVALFAALG 481
            A  +A    +L    Y+AG V+Y+D+  A      A  +  +   ++ Q +V L  ALG
Sbjct: 406 AAADAAQHTQSLAMNSYQAGAVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALG 465

Query: 482 GGW 484
           GGW
Sbjct: 466 GGW 468