Pairwise Alignments

Query, 499 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

 Score =  198 bits (503), Expect = 4e-55
 Identities = 149/484 (30%), Positives = 224/484 (46%), Gaps = 16/484 (3%)

Query: 4   TPAPGWRWLAAVLALAGTGLSAGCMVGPDFVRPAPAQVDSYTRGALPATTEAGDGRSQRF 63
           T   G R L A L +A   L + C + PD+ RP           +  A  +  +G +Q  
Sbjct: 16  TRGRGSRLLGAGLCVA---LLSACTLSPDYHRPE--------LNSTAAQFKHAEGWTQAS 64

Query: 64  GPAAELPADWWRLFGSPALDEAVRQALQHNPTLQSAEASLRQSQDELRAGHGIFYPQLDA 123
              A     WW ++G   L+  V +  + N T+  +EA  RQ+Q  +R+     +P LD 
Sbjct: 65  PSDAIARGAWWEIYGDAGLNALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDL 124

Query: 124 SFGATRARTAPVLQGSSAAGT---IYQVVTLSGAISYPLDVFGGERRTVEGLAAQAENQR 180
           S    R+        SS +     I         +S+ +D++G  R T+    A AE   
Sbjct: 125 STSKNRSAQGTGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASF 184

Query: 181 FVAMAAYLALEANLVQTCVARAAYVAQRRTTEELIALERDQLHSIEAQVHAGTVPYANQL 240
               +  L+ ++ LVQ  +       Q+R  E  +A     L   E Q  AG        
Sbjct: 185 ADLASIRLSQQSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVA 244

Query: 241 SQLSLIASNRAQLAALAQKISQADHLLAALQGDTPAEAALPDVDIGELTLPRDLPLSLPS 300
              + + S +A L  L  + +Q ++ +A L G  PA+ AL D       LP+ +P+SLPS
Sbjct: 245 QARTQLKSTQADLIDLIWQRAQFENAIAVLLGKAPADFALADSKAIP-ALPQ-IPVSLPS 302

Query: 301 ELVRQRPDILAAEAQLHAASAAIGVATAAMFPSFSLSAGYGAASPQLASLLAGGSRYWSL 360
           +L+ +RPDI AAE  + AA+A IGV+ AA FP  SLS   G +S   ++ +   +RYWS+
Sbjct: 303 QLLERRPDIAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSV 362

Query: 361 APAVALPLLHGGTLRARRQAAIDAHAAREADYRQTVLSAFEQVADALRALEHDAQALQAQ 420
            P +AL L   G   A     +  +    A YRQTVL  F +V + L  L+        +
Sbjct: 363 GPQLALTLFDAGKRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVR 422

Query: 421 AEARSSAADALALQQAGYRAGLVAYVDLQNADIQFHAASLSYLSALAQRHQDTVALFAAL 480
            EA  +A ++L L +  YRAGL+ Y+D+ N      +   S L+ L  R   +V L AAL
Sbjct: 423 QEALDAARESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAAL 482

Query: 481 GGGW 484
           GGGW
Sbjct: 483 GGGW 486