Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 1/156 (0%)

Query: 6   KAALRALFLARYAQFRKHLQIRLGSEDLANDALQEAYLRVENTNVRSAVRYPSAYLFRIA 65
           +A    +F A+ A+    +  R+G    A+D +QE +LR         V     YL R A
Sbjct: 18  RARFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWR-RPEVKVEALDTYLLRCA 76

Query: 66  LNVAEDQRKSNSRLLSVGEVEELYDMADEMADPARGAEARNELEALERALAELPRRRRAI 125
            N+A D  +S S    V E       A     P +  E  ++L+ +E  L  LP R R I
Sbjct: 77  GNLAIDHLRSESSRERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEATLRALPERTRQI 136

Query: 126 VLAARVDEMPHKDIAARYGVSARTVEKELRAGLEHC 161
            L  R+    + +IA    +S   VEK +   LE C
Sbjct: 137 FLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEAC 172