Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)

Query: 17  YAQFRKHLQIRLGSEDLANDALQEAYLRVENTNVRSAVRYPSAYLFRIALNVAEDQRKSN 76
           Y +    L  RLGS   A D   +AYLRV        + +P A+L+R ALN+  D+ +  
Sbjct: 5   YRELVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHR-- 62

Query: 77  SRLLSVGEVEELYDMADEM--ADPARGAEARNELEALERALAELPRRRRAIVLAARVDEM 134
            +L+   E  +  D    +  ++     +    L  +++AL EL R  R   L  +++ +
Sbjct: 63  RQLVRQAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGL 122

Query: 135 PHKDIAARYGVSARTVEKELRAGLEHCCERL 165
            H+ IA R G+S   VEK +   ++HC  R+
Sbjct: 123 SHQQIAERLGISRSLVEKHIVNAMKHCRVRM 153