Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 73.9 bits (180), Expect = 3e-18
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 1   MPDSIKAALRALFLARYAQFRKHLQIRLGSEDLANDALQEAYLRVENTNVRSA-VRYPSA 59
           M  S  + L A F   Y    + L  R+     A D  QE YL++ N + ++  V +  +
Sbjct: 1   MLTSPMSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARS 60

Query: 60  YLFRIALNVAEDQRKSNSRLLSVGEVEELYDMADEMADPARGAEA----RNELEALERAL 115
           ++FR+A N+A D  +   R+ +  +     D A E+A PA   EA    R  L+ L++AL
Sbjct: 61  FIFRVAGNLAIDALRREQRIAASHDDS---DGACEVACPAPAPEAALLARERLQILDQAL 117

Query: 116 AELPRRRRAIVLAARVDEMPHKDIAARYGVSARTVEKELRAGLEHCCERL 165
            +LP   R  +L  RV+ +  K +A R GVS   V K +   L HC  RL
Sbjct: 118 LQLPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRL 167