Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 61.2 bits (147), Expect = 9e-15
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 6/161 (3%)

Query: 6   KAALRALFLARYAQFRKHLQIRLGSEDLANDALQEAYLRVENTNVRSAVRYPSAYLFRIA 65
           ++   ++FL +     + LQ  +G+   A D LQE YLRV        + +   ++F+ A
Sbjct: 3   QSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTA 62

Query: 66  LNVAEDQ---RKSNSRLLSVGEV--EELYDMADEMADPARGAEARNELEALERALAELPR 120
            N+A D    R+  +R+L V +V  E L+ +A         A A   L+ L  +L +L  
Sbjct: 63  RNLALDHLRARRVQARML-VDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSE 121

Query: 121 RRRAIVLAARVDEMPHKDIAARYGVSARTVEKELRAGLEHC 161
           R++ I + +R+    + +IA +  VS  TV+KEL+  +  C
Sbjct: 122 RQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAIC 162