Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 64.7 bits (156), Expect = 8e-16
 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 13  FLARYAQFRKHLQIRLGSEDLANDALQEAYLRVENTNVRSAVRYPSAYLFRIALNVAEDQ 72
           FL  Y +       +L S   A D   +A++RV  T  R  V  P AYL + A N+A D 
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETP-REQVEQPRAYLHQAARNIAVDG 65

Query: 73  RKSNSRLLSVGEVEELYDMADEMADPARGAEARNELEALERALAELPRRRRAIVLAARVD 132
            +   R  ++ E E   + A    DP     A    +++ERALAELP   R + +  +++
Sbjct: 66  FRREDRRQAL-EREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKLE 124

Query: 133 EMPHKDIAARYGVSARTVEKELRAGLEHCCERL 165
            +   +IA R G+S   VEK +   L H  E L
Sbjct: 125 GLTQAEIAERMGLSKNMVEKYMIRTLRHLREHL 157