Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 58.9 bits (141), Expect = 5e-14
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 12  LFLARYAQFRKHLQIRLGSEDLANDALQEAYLRVENTNVRSAVRYPSAYLFRIALNVAED 71
           L+ + +   R  L+ R+G  + A D  Q+ ++R+      S ++ P AYL  IA  +  D
Sbjct: 15  LYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGLMID 74

Query: 72  QRKSNSRLLSVGEVEELYDMAD-EMADPARGAEARNELEALERALAELPRRRRAIVLAAR 130
           Q +   R L     E L  + + E+          + LE L+RAL +L  R R   L A+
Sbjct: 75  QFRR--RALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLAQ 132

Query: 131 VDEMPHKDIAARYGVSARTVEKELRAGLEHC 161
           +D +    +A R GVS  TVE++L   L  C
Sbjct: 133 LDGLSIVQVAQRLGVSRATVERDLAKALGAC 163