Pairwise Alignments

Query, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  491 bits (1263), Expect = e-143
 Identities = 290/604 (48%), Positives = 359/604 (59%), Gaps = 47/604 (7%)

Query: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60
           M+F  L L+ A+++A+   GY  PTP+Q +AIPAVL G DL+  AQTGTGKT  F LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  HKLSMSR--SATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMN 118
            +L  +     + + G    R LVLTPTRELAAQV +S + Y + L L S  IFGGVGMN
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 119 PQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILAL 178
           PQI  + KGVD+LVA PGRLLDL  QG +DL+ V++L+LDEADRMLDMGFIHDVKK+LA 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 179 VPKEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALL 238
           +P ++Q+LLFSATFS DI DLA  LL NP+ I+VTP NTTV+RI Q ++ +    K+ALL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 239 AHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDI 298
           AH+I    W QVLVFTRTK GAN +AE+L K G+ A A+HGNKSQ+ART+ALA FK+  +
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGF 358
           R LVATDIAARG+DID+LPHVVN+E+PNV EDYVHRIGRTGRAG SGEA+S V  DEE  
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 359 MQEIERFTKQTIPVQIVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAART 418
           ++ IER TKQ I    + GF   + E  +P A  R    G  GR                
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGR---------------- 404

Query: 419 EMLQRIRENKAGQGGGNGGGGGNGGGQRRGGGQGGGQGRGANGGGQGQGQGPRGPGGGGA 478
                  +   G+GG +  GG    G+ +G  +     +  +    G  Q PR P    +
Sbjct: 405 ------NQQARGEGGKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKS 458

Query: 479 RAPQGRGPQGPARAPHHAPHQQAHQPHDERQPRHHGNSHSPTQANQVAHLRAEAVGGGAG 538
           R  Q      P       P +      D    R   +  SP Q       R     GGAG
Sbjct: 459 RPQQASNNSVPKPPADRDPEEFLDDELDNFGNR--ADYVSPYQGKNQGRNRRP---GGAG 513

Query: 539 QPDPLRTSVDHMGGGRGRGRPGGGGGGYGGGNRSGGGGRSGGG-----GGYGGGGGRSGG 593
           Q           G G+G G+    GG   G  R+GG  RSGGG         GGG R  G
Sbjct: 514 Q-----------GQGQGNGQRSNAGG--QGQARNGGQPRSGGGEKRPPRANNGGGARRDG 560

Query: 594 GGGR 597
           GGGR
Sbjct: 561 GGGR 564