Pairwise Alignments

Query, 400 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 80/353 (22%), Positives = 140/353 (39%), Gaps = 25/353 (7%)

Query: 16  ALGAAAVAPQLFAQGSSSGGPVKIGYAIARTGPWAAGAQVSQEPNYLLWAEQ----VNAA 71
           A+  A VA   FA  +     +KIG A  +TGP      +       + A+Q    +NA 
Sbjct: 14  AMVLAGVAGHSFAADT-----IKIGIAGPKTGPVTQYGDMQ-----FMGAKQAIADINAK 63

Query: 72  GGLSVKGTKRPIELIGYDDRSETETCVRTFEKLMGSDKVDLVLPPWGSGANFAVAPLANR 131
           GG+  K     +E   YDD  + +  V    K++ +D V  V+    S +    + +   
Sbjct: 64  GGVDGK----MLEAKEYDDACDPKQAVAVANKVV-NDGVKFVVGHLCSSSTQPASDIYED 118

Query: 132 FGYPLLAPTALSRKLIDMRLPFFFSLLQQPDKMMGALVDMLVSQNVKTITIVYMDDL--F 189
            G  ++ P A S ++        F  +   D   G      ++ +VK   +  + D   +
Sbjct: 119 EGVIMITPAATSPEITARGYKLIFRTIGL-DSAQGPAAGNYIADHVKPKIVAVLHDKQQY 177

Query: 190 GLENFAALNNALKKTSIQVLDRKSYPLGVKDLAPVLRTMKDLNPDAFIGITYPPDTILAS 249
           G     A+   L+K   +V   +    G KD + +++ +K  N D      Y P+  L  
Sbjct: 178 GEGIATAVKQTLEKKGTKVAVFEGLNAGDKDFSSIIQKLKQANVDFVYYGGYHPELGLIL 237

Query: 250 RQAREVGFNPKYFYASVGTAFQLYKNVMAANTEGVIGMGSWNGKTSPEAKAYFDAHTKKF 309
           RQA+E G N K F    G        +    +EG++     +  T P  KA  +   K  
Sbjct: 238 RQAKEKGLNAK-FMGPEGVGNDSISQIAQGASEGLLVTLPKSFDTDPANKAIVEEFAKN- 295

Query: 310 GKEPDRWASGHAWAGLQILQQAVEKV-GLDRKALREQIAKNEFKTILGPIRFE 361
            ++P       A++ ++++   ++     D   + E I    FKT  G + F+
Sbjct: 296 KQDPTGPFVFPAYSAIEVIAGGIKAAKSEDTAKVAEAIHAGTFKTPTGDLSFD 348