Pairwise Alignments

Query, 312 a.a., Nucleoside ABC transporter, permease protein 1 from Variovorax sp. SCN45

Subject, 339 a.a., Branched-chain amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  109 bits (273), Expect = 8e-29
 Identities = 87/306 (28%), Positives = 139/306 (45%), Gaps = 17/306 (5%)

Query: 5   LPRNKPWLVLCIGLVLAAAVPWVASEFVASVALGCLMYIALATSWSLFCGATRYLSLATS 64
           LP  K      + LV+A+ V        A++A   L++   A + +L  G T  LS    
Sbjct: 7   LPVAKGRAPALLSLVVASLVALPLLLPSATLATEILIFAMAALACNLLLGYTGLLSFGQG 66

Query: 65  AFFGLGAYASATLLDVLPWPL--VILSGAAIASAVAVLMGAAVLHLRGTYFAVLTFGMTE 122
            FFG+GAY +A L+  L W +   +L  A   + +A+L+GA  +   G YF +LT   ++
Sbjct: 67  IFFGVGAYGAALLMIHLQWGMFAALLGAAVFGAFLALLVGALAIRRTGIYFVMLTLAFSQ 126

Query: 123 LIRHAVTFVEKQVSG-------------TVGRVLTVVPSNETVYLTVLAIAGAAIATALL 169
           +       +     G               G VL  +      Y+ V  +     A AL 
Sbjct: 127 MAYFLAYTLSGWTGGDNGLLDVPRPNIEIAGHVLVDLADPRHFYVFVAVLFLLIFAAALR 186

Query: 170 VKRSRFGLALAGIGADEQRAQTLGVDTRRAKVMGFALTAAFAGAVGAAMAVRWTYIDPPA 229
           V RS FG  L  I  +E RA  +G DTR  K++ F L+ A  G  GA  A+   +  P +
Sbjct: 187 VIRSPFGSTLLAIRENETRAAAIGYDTRHFKILVFMLSGAITGIAGALYAM-LLHFAPLS 245

Query: 230 VFSPFIGFQTVLIAMIGGATSIGGPVAAAIVFSLLSETLRLQLPYGYMMVLGLLLILCVM 289
                +    +++ ++GG  S+ G +  A    LL + L    P  ++M+LG++LIL V+
Sbjct: 246 NIDLMMSENILIMTIVGGTGSLFGSLLGAGAIVLLGDVLSELWP-RWLMLLGVILILVVV 304

Query: 290 YLPNGL 295
           ++  GL
Sbjct: 305 FMRGGL 310