Pairwise Alignments

Query, 298 a.a., Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) from Variovorax sp. SCN45

Subject, 342 a.a., putative amino-acid ABC transporter-binding protein YhdW from Pseudomonas putida KT2440

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 72/259 (27%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 1   MDLRKLPLALGLTLAFACGAAS-AQDGGTLQKIKDSGIIQIGGRDSQIPFSYKLGSDSAS 59
           M + K  LA+ LT A A GA S AQ G TL  +K  G +Q G  D    FS    +    
Sbjct: 1   MKMLKTTLAV-LTAAAALGAVSTAQAGATLDAVKKKGFVQCGVSDGLPGFSVP-DAQGKI 58

Query: 60  IGFTNDICLKIVDAVKAKLGLPKLEVRYTMLNSANRIPLLQNGTVDLDCATTTNTTQRQA 119
           +G   D+C  +  AV         +V+++ LN+  R   LQ+G VD+    TT T+ R A
Sbjct: 59  VGIDADVCRAVAAAVFGDA----TKVKFSQLNAKERFTALQSGEVDVLSRNTTWTSSRDA 114

Query: 120 QVD--FAPSHFVTNITAAVRKDSGINTFADLNGKNVATVTGSTSIQLLRGARKSGAIEVH 177
            +   FA   +   +   V K  G+++  +L+G  +    G+T+   +    ++  ++  
Sbjct: 115 GMGLVFAGVTYYDGVGFLVNKKLGVSSAKELDGATICIQAGTTTELNVSDFFRANGLKYT 174

Query: 178 EIAGKDTSDGFLLLSSGRADAYVLDDVQLAGMIASAPNPGDYKILKESLRQEPYGIMLRK 237
            I    + +    L SGR D    D  QL    +    P +Y +L E++ +EP G ++RK
Sbjct: 175 PITFDTSDESAKSLESGRCDVLTSDKSQLFAQRSKLAAPTEYVVLPETISKEPLGPVVRK 234

Query: 238 DDPQFKAVVDETVTGLMKS 256
            D ++ ++V  T+  ++ +
Sbjct: 235 GDEEWFSIVKWTLFAMLNA 253