Pairwise Alignments

Query, 274 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 304 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  216 bits (550), Expect = 5e-61
 Identities = 112/272 (41%), Positives = 173/272 (63%), Gaps = 7/272 (2%)

Query: 9   RIVMVSALVLLVIAVMAIGAPLFASADPNDTAVLERLKAP------SAEHLLGTDELGRD 62
           R  ++   V +++ ++A+ A + A  DP        L  P       A  LLGTD +GRD
Sbjct: 33  RGAVIGLAVFILLVLIAVFAAVIAPHDPTQQYRDALLVPPVWQDGGRAAFLLGTDAVGRD 92

Query: 63  MYSRIVHGARYSLAIAALTALGAVVAGTVLGLMAGFFRR-LDAPLMRVVDAMMSFPDILL 121
           M SR+++GA+YSL I  +    A+V G V+GL+AGFF   +D  +MRV+D +++FP +LL
Sbjct: 93  MLSRLIYGAQYSLFIGVVVVSIALVGGIVIGLVAGFFGGWVDTVIMRVMDVILAFPSLLL 152

Query: 122 AIALVAILGPSLVNTVLALVLVYTPRVARVVRASTLVVRELLFVEAVRALGVRTSRILWR 181
           A+ LVAILGP L N ++A+ +VY P  AR+ RA+ +      +V A R  G    R++++
Sbjct: 153 ALVLVAILGPGLTNAMIAIAIVYQPHFARLTRAAVMSELRREYVTAARVAGAGNLRLMFK 212

Query: 182 HILPNLMSPILVQVSFIFAYAILAEAGLSFLGVGVPPEIPTWGTMVAGSQQYAHQAFWVV 241
            ILPN ++P++VQ +  F+ A+L  A L FLG+G  P    WGTM+A ++++  +A+WVV
Sbjct: 213 TILPNCLAPLIVQATLSFSSAVLDAAALGFLGMGAQPPASEWGTMLAEAREFILRAWWVV 272

Query: 242 LFPGLAIIFTALSLQLLGDGVRDLLDPKLKKT 273
             PGL I+ + L++ L+GDG+RD LDPKLK++
Sbjct: 273 TLPGLTILISVLAINLMGDGLRDALDPKLKRS 304