Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 1   MLDERYLSQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQAWLTT 60
           M   R+   F   R  L+R   RM+   + AED++Q+TYLR   A  +   D  + ++  
Sbjct: 1   MSQSRFNHVFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQ 60

Query: 61  VMQNLAVDRLRRDRWMQWWLKDAEGL----SPQAP-SAETEAAQAQEADHALRLLAERLS 115
             +NLA+D LR  R     L++   L    S  AP S   +A QA++   AL +   +LS
Sbjct: 61  TARNLALDHLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLS 120

Query: 116 RTDAAAVLLREVFELSYSEIAKVSGKTEAGCRQQL 150
                  +L  +   SY EIA   G + +  +++L
Sbjct: 121 ARQQRIFILSRLHGCSYQEIADQLGVSLSTVQKEL 155