Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 183 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

 Score = 46.6 bits (109), Expect = 4e-10
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 5/160 (3%)

Query: 3   DERYLSQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQ-AWLTTV 61
           D   L  F   R  LV+ AAR+ G  + AEDVVQD Y R   A    +   AQ ++L  +
Sbjct: 11  DSPLLQAFVDNRLILVKIAARITGCRSRAEDVVQDAYFRLQSAPTITSSFKAQLSYLFQI 70

Query: 62  MQNLAVDRLRRDRW-MQWWLKDAEGLSP--QAPSAETEAAQAQEADHALRLLAERLSRTD 118
           ++NLA+D  R+    +++   + EGL+      S ET        ++    L E   RT 
Sbjct: 71  VRNLAIDHYRKQALELKYSGTEEEGLNVVIHGASPETSHINFNTLENIADALTELPQRTR 130

Query: 119 AAAVLLREVFELSYSEIAKVSGKTEAGCRQQLHRALMRLR 158
            A  + R +  +   +IAK  G +       +  AL+  R
Sbjct: 131 YAFEMYR-LHGVPQKDIAKELGVSPTLVNFMIRDALVHCR 169