Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 60.8 bits (146), Expect = 2e-14
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 23  RMLGGTADAEDVVQDTYLRALEAADKPAPDSAQAWLTTVMQNLAVDRLRRDRWMQWWLKD 82
           R LG    A DV QDT+LR L +   P    ++++L  + +NL +D+ RR R  + +L+ 
Sbjct: 28  RRLGDREHAADVAQDTFLRLLVSGRFPGDKESRSYLAQIARNLVIDQWRRLRIERAYLES 87

Query: 83  AEGL-SPQAPSAETEAAQAQEADHALRLLAERLSRTDAAAVLLREVFELSYSEIAKVSGK 141
              L  P++PS ET A    E    +  + +R+      A LL +   LSY++IA+  G 
Sbjct: 88  IAHLPEPESPSLETRAL-ILETLMQIDAMLDRMPDNVRQAFLLSQFEGLSYAQIAERLGV 146

Query: 142 TEAGCRQQLHRALM 155
           T +  ++ + RA++
Sbjct: 147 TVSSVQKYMTRAIV 160