Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 41/134 (30%), Positives = 64/134 (47%)

Query: 23  RMLGGTADAEDVVQDTYLRALEAADKPAPDSAQAWLTTVMQNLAVDRLRRDRWMQWWLKD 82
           R LG    A D+ QDTY+R L+A + P     +A+L TV + +  +  RR    + +L+ 
Sbjct: 32  RRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLATVAKRVLCNHFRRQELERAYLQA 91

Query: 83  AEGLSPQAPSAETEAAQAQEADHALRLLAERLSRTDAAAVLLREVFELSYSEIAKVSGKT 142
              +  +    E + A   E   AL  L + L      A LL +V  L   EIA+  G +
Sbjct: 92  LAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVKRAFLLAQVDGLGQGEIARELGIS 151

Query: 143 EAGCRQQLHRALMR 156
            A  ++ L++A MR
Sbjct: 152 LATVKRYLNKAAMR 165