Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 10/155 (6%)

Query: 5   RYLSQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQAWLTTVMQN 64
           R++  F A R+R+    +R +G  A A D+VQ+ +LR     +    ++   +L     N
Sbjct: 20  RFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVKV-EALDTYLLRCAGN 78

Query: 65  LAVDRLR----RDRWMQWWLKDAEGLSPQAPSAETEA-AQAQEADHALRLLAERLSRTDA 119
           LA+D LR    R+R  +  +  +E    QAP    E     Q  +  LR L ER  +   
Sbjct: 79  LAIDHLRSESSRERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEATLRALPERTRQ--- 135

Query: 120 AAVLLREVFELSYSEIAKVSGKTEAGCRQQLHRAL 154
              LL  +    YSEIAK    +++   + + RAL
Sbjct: 136 -IFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRAL 169