Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 53.1 bits (126), Expect = 4e-12
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 7/161 (4%)

Query: 3   DERYLSQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQ-AWLTTV 61
           D   L  F   RS LV+ AAR+ G  + AEDVVQD + R   A    +   AQ ++L  +
Sbjct: 11  DSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQI 70

Query: 62  MQNLAVDRLRRDRW-MQWWLKDAEGLSPQAPSAETEAAQAQEADHALRLLAERLSRTDAA 120
           ++NLA+D  R+    +++   + EG++    +A  EA     A  AL  +AE L+     
Sbjct: 71  VRNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRA--ALNDIAEALNELPPR 128

Query: 121 AVLLREVFELS---YSEIAKVSGKTEAGCRQQLHRALMRLR 158
                E++ L+     +IAK  G +       +  AL+  R
Sbjct: 129 TRYAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCR 169