Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 196 a.a., RNA polymerase sigma factor SigX from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 9e-12
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 17  LVRAAARMLGGTADAEDVVQDTYLRALEAADK-PAPDSAQAWLTTVMQNLAVDRLRRDRW 75
           L    AR LG   DA+DV Q+  L+ L            + WL ++  N  + + R++R 
Sbjct: 47  LFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERR 106

Query: 76  MQWWLKDAEGLSPQAPSAETEAAQAQEADHALRLLAERLSRTDAAAVLLREVFELSYSEI 135
            +  L DA  L P   ++E +A + +E     + L   ++  D   ++LR V EL + EI
Sbjct: 107 KRR-LMDALSLDPVEEASEDKAPKPEEKGGLDKWLVH-VNPIDREILVLRFVAELEFQEI 164

Query: 136 AKVSGKTEAGCRQQLHRALMRLRGREA 162
           A +     +  + +  RAL +LR + A
Sbjct: 165 ADIMHMGLSATKMRYKRALDKLREKFA 191