Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 1   MLDERYLSQFPALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQAWLTT 60
           M   R+ S F   R  L+R   RM+G  + AED++Q+TYLR   A  +   +  + ++  
Sbjct: 1   MSQSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQ 60

Query: 61  VMQNLAVDRLRRDRWMQWWLKD------AEGLSPQAPSAETEAAQAQEADHALRLLAERL 114
             +NLA+D LR  R     L D         ++  A S+E +AA A++    L +   +L
Sbjct: 61  TARNLALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSE-DAAHAEQLLKHLSVSLNQL 119

Query: 115 SRTDAAAVLLREVFELSYSEIAK 137
           S       +L  +   +Y EIA+
Sbjct: 120 SERQQRIFILSRLHGATYLEIAE 142