Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 177 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

 Score = 55.1 bits (131), Expect = 1e-12
 Identities = 51/156 (32%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 12  ALRSRLVRAAARMLGGTADAEDVVQDTYLRALEAADKPAPDSAQ-AWLTTVMQNLAVDRL 70
           A R  L+R    M+G    AED+VQ+T LRA+ A    A  S    WL+ +  N   D  
Sbjct: 2   AHRGELLRFVQGMVGNAHLAEDLVQETLLRAVAAQQAFAGRSRPLTWLSAIALNALRDHF 61

Query: 71  RRD---RWMQWWLKDAEGLSPQAPSAETEAAQAQEAD---HALRLLAERLSRTDAAAVLL 124
           RR    R      +D  GL+ Q   A T   +A+  D     L  L +RL       ++L
Sbjct: 62  RRPATRREESAAPEDFAGLADQCEDAVTALMKAEMGDCITAHLSALPDRLRE----VLVL 117

Query: 125 REVFELSYSEIAKVSGKTEAGCRQQLHRALMRLRGR 160
            ++    ++E+A   G TE   R  LHRA   LR R
Sbjct: 118 HDMGGAGHAEVAAALGITEGNARVLLHRARAALRER 153