Pairwise Alignments

Query, 257 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 200 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 31  AEDVVQDTYLRALEAADKPAPDSA---QAWLTTVMQNLAVDRLRR-DRWMQWWLKDAEGL 86
           AED++QD +++ ++  +    +     Q WL  +  NLAVD  R+  R+    ++D   L
Sbjct: 49  AEDLLQDVFVKVIQTLNSDRYNEEGKFQPWLMRIAHNLAVDYFRKMKRYPFIMMEDGSNL 108

Query: 87  SPQAPSAET--EAAQAQEADHAL-RLLAERLSRTDAAAVLLREVFELSYSEIAKVSGKTE 143
                 A++  E  Q ++  HAL R L + L  +    +++R   +LS+ EIA  +G + 
Sbjct: 109 FNTLKFADSNVEDQQVKDETHALVRDLIDELPESQKQVLIMRHYMDLSFQEIADQTGVSI 168

Query: 144 AGCRQQLHRALMRLR 158
                ++  AL+ +R
Sbjct: 169 NTALGRMRYALINMR 183