Pairwise Alignments

Query, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

Subject, 569 a.a., ssDNA-specific exonuclease RecJ from Pseudomonas putida KT2440

 Score =  520 bits (1340), Expect = e-152
 Identities = 286/582 (49%), Positives = 383/582 (65%), Gaps = 23/582 (3%)

Query: 1   MKIIDREIPPRTVWALEQAGVHPLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAA 60
           M+I  R +PP   +      + PLL RL+AARGV+++ ELD  LARLL    L+G     
Sbjct: 1   MRIEPRPLPPTLPFL---GNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGV 57

Query: 61  VLLADAIAQDKRLCIVADYDCDGATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPI 120
            LL +AI Q +R+ IV D+D DGATA  VGV GLRLLGA +V YLVP+R   GYGLTP I
Sbjct: 58  DLLVEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEI 117

Query: 121 AERVAASGADMLITVDNGIASVEGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPG 180
            E        +LITVDNGI+SV+GVAAAKA GL+VLVTDHHLPG +LP AD ++NPNQPG
Sbjct: 118 VEVALQRQPQLLITVDNGISSVDGVAAAKAAGLKVLVTDHHLPGEQLPDADAIINPNQPG 177

Query: 181 CEFESKSIAGVGVMFYVLLALRSELRKRGVFDTATQPKLDALLPLVALGTVADVVKLDAN 240
           C F SKS+AGVGV+FYVL+ALR+ LR  G ++   QP +  LL LVALG+VADVV LDAN
Sbjct: 178 CSFPSKSLAGVGVIFYVLMALRARLRSLGRYEAQPQPNIGELLDLVALGSVADVVPLDAN 237

Query: 241 NRRLVAQGLRRIRAGAMPAGVAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLG 300
           NR LV QGL RIRAG    G+ A+ + A R     T+ D GF LGPR+NAAGRL DM+LG
Sbjct: 238 NRILVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLG 297

Query: 301 IECLLTDDAGRAEELARMLDGINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPA 360
           IECLL +DA  A+++A+ LD +N++R+ IE GM+ +AL   + L         + + P  
Sbjct: 298 IECLLCEDAALAQDMAQQLDDLNQDRKSIEQGMQREALAQLKDL--------PVESMPYG 349

Query: 361 ISVFDAGFHEGVVGIVASRIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALD 420
           + +FDA +H+GV+GI+ASR+K+R+HRPT  FA +G    +  LKGS RS+PGFH+RDALD
Sbjct: 350 LCLFDADWHQGVIGILASRLKERYHRPTIAFADAG----DGMLKGSARSVPGFHIRDALD 405

Query: 421 LVAKRHPGVLLRFGGHAMAAGCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIA 480
            VA RHP ++ +FGGHAMAAG ++   +F  F + F +  R  L +  LT ++ +DG +A
Sbjct: 406 AVAARHPQLISKFGGHAMAAGLSLPEANFSAFAEAFDEEVRRQLREEDLTGRLLSDGSLA 465

Query: 481 REYMRIDLVDTL-HREVWGQGFAPPTFSEEVEVVSQRLVGEKHLSLKLRHQ--GQPIDAM 537
            E   +DL   L H   WGQ F  P F    ++V QR+VGE+HL + L+ +     +D +
Sbjct: 466 VEEFHLDLAKALRHAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVRLDGI 525

Query: 538 WFSHTEPLPPR-----VKLAFRLDADEWQGVRRLRFLVEGAE 574
            F     + P      V+LA++LD +E++G   ++ ++   E
Sbjct: 526 AFGIDREVWPNPTVRWVELAYKLDVNEFRGNESVQLMIAHME 567