Pairwise Alignments

Query, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

Subject, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

 Score =  457 bits (1175), Expect = e-133
 Identities = 251/563 (44%), Positives = 357/563 (63%), Gaps = 20/563 (3%)

Query: 19  AGVHPLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAAVLLADAIAQDKRLCIVAD 78
           A + PLL RL+A+RGVR+  EL+  +  +L    L G   A  +L +A  +  R+ +V D
Sbjct: 20  AELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGD 79

Query: 79  YDCDGATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITVDNG 138
           +D DGAT+ A+ V  +R LG  N+ YLVP+R  DGYGL+P + ++  A GA +++TVDNG
Sbjct: 80  FDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNG 139

Query: 139 IASVEGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMFYVL 198
           I+S  GV  A++ G+ V+VTDHHLPG  LP A+ ++NPN   C F SKS+AGVGV FY++
Sbjct: 140 ISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLM 199

Query: 199 LALRSELRKRGVFD--TATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGA 256
           LALR+ LR +G FD      P L  LL LVALGTVADVV LDANNR L  QG+ RIRAG 
Sbjct: 200 LALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGK 259

Query: 257 MPAGVAALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELA 316
              G+ AL + A+R A      D GFALGPR+NAAGRL DM++G+  LL D+ G A  LA
Sbjct: 260 CRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLA 319

Query: 317 RMLDGINRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGIV 376
             LD +N+ R++IE GM+ +AL L E L  +          P  ++++   +H+GVVGI+
Sbjct: 320 NELDALNQTRKEIEQGMQIEALTLCEKLERSRD------TLPGGLAMYHPEWHQGVVGIL 373

Query: 377 ASRIKDRFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGH 436
           ASRIK+RFHRP   FA +G    +  LKGSGRSI G H+RDAL+ +   +PG++L+FGGH
Sbjct: 374 ASRIKERFHRPVIAFAPAG----DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGH 429

Query: 437 AMAAGCTVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTLH-RE 495
           AMAAG ++  + F+ F++ F ++  E L  + L  ++ +DGP++   M +++   L    
Sbjct: 430 AMAAGLSLEEDKFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAG 489

Query: 496 VWGQGFAPPTFSEEVEVVSQRLVGEKHLSLKLR--HQGQPIDAMWFSHTEPLPP-----R 548
            WGQ F  P F     ++ QRLVGE+HL + +     G  +D + F+    L P      
Sbjct: 490 PWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVRE 549

Query: 549 VKLAFRLDADEWQGVRRLRFLVE 571
           V+LA++LD +E++G R L+ +++
Sbjct: 550 VQLAYKLDINEFRGNRSLQIIID 572