Pairwise Alignments

Query, 320 a.a., LSU ribosomal maturation GTPase RbgA (B. subtilis YlqF) from Variovorax sp. SCN45

Subject, 487 a.a., GTPase Der from Pseudomonas putida KT2440

 Score = 47.4 bits (111), Expect = 7e-10
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 26/153 (16%)

Query: 21  VKDIDVVIELLDARLPGSSANPMLAELTARRPSLKVL--NKQDLADPERTVRWLAHYNAL 78
           +++ D V+ L+DAR   ++A+ M+AE   +R    +L  NK D  DP+      A ++ +
Sbjct: 79  IEEADYVLFLVDARAGMTAADQMIAEHLRKRNKAAILVANKIDNIDPDVA---RAEFSPM 135

Query: 79  PDTRAIGLDASQTTPAQQLVKAC--------------HELSPNRGGMAKP-------MRV 117
               AI +  SQ      L++A                +++     +  P       +++
Sbjct: 136 GMGNAIPVAGSQGRGINALMEAVLGHLPRDAEEEALEQDVAEGEEAVRIPGPSEKDGIKI 195

Query: 118 LICGIPNVGKSTLINTLTGGRKAKTGDEAGITK 150
            I G PNVGKSTL+N + G  +    DE G T+
Sbjct: 196 AIIGRPNVGKSTLVNRMLGEERVVVYDEPGTTR 228



 Score = 37.7 bits (86), Expect = 6e-07
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 117 VLICGIPNVGKSTLINTLTGGRKAKTGDEAGITKLEQ 153
           + + G PNVGKST+ N LT  R A  GD +G+T+  Q
Sbjct: 5   IALVGRPNVGKSTMFNRLTKTRDAIVGDLSGLTRDRQ 41



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 19  ERVKDIDVVIELLDAR--LPGSSANPMLAELTARRPSLKVLNKQDLADP 65
           + +KD +VVI ++DAR  +     N +   L A R  +  LNK D  +P
Sbjct: 270 QAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRAIVIALNKWDGMEP 318