Pairwise Alignments

Query, 183 a.a., LSU rRNA pseudouridine(2457) synthase (EC 5.4.99.20) from Variovorax sp. SCN45

Subject, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

 Score = 83.2 bits (204), Expect = 5e-21
 Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 20/178 (11%)

Query: 9   RLIRFNKPYG-VLSQFTPEGRWRGLKDFIDIP--GVYV-AGRLDADSEGLLLLTDDGKLQ 64
           R+I +NKP G + ++  PEGR   + D +  P  G ++  GRLD ++ GLLL T DG+L 
Sbjct: 80  RVIMYNKPDGEICTRDDPEGR-PTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDGELA 138

Query: 65  ARIADPRFKMEKIYWVQVEGTPTEEALAALRAGVQLNDGPTRPARARLLDPPPQVWERQP 124
            R+  P ++M++ Y V+V G   +E +  L+AGV L DGP     A+  D       ++ 
Sbjct: 139 NRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGP-----AKFTDI------QKA 187

Query: 125 PIRERKSIPTAWLELAIREGRNRQVRRMTAAVGLPTLRLIRAAIGPHTLEGLAP-GSW 181
           P  E  +    W    + EGRNR+VRR+  + G+   RL R   GP  L    P G W
Sbjct: 188 PGGEGFN---HWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRW 242