Pairwise Alignments

Query, 512 a.a., Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA from Variovorax sp. SCN45

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  150 bits (378), Expect = 1e-40
 Identities = 107/354 (30%), Positives = 165/354 (46%), Gaps = 19/354 (5%)

Query: 87  GAATST--VGIATAKKADIPVQLEALGTVTPLANVVVQPQVSGVLTAVLFQEGQMVKKGD 144
           GAA ++  V I T     + +  E  G V P+    V+ +V G++    F+EG  VK GD
Sbjct: 30  GAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPGIVLHKRFEEGADVKAGD 89

Query: 145 VLATIDPQPFQNALAQATGARQRDEAQLAAARVTLSRYQTLLGQDSIARQDVDTQAALVK 204
           VL  IDP PF+ ALA+A     R +A    A+  + RY+ L+  +++++QD D+  A ++
Sbjct: 90  VLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLVKIEAVSQQDFDSATAELR 149

Query: 205 QLEGTVAIDRANENTAKLNLTWSRITAPVSGRIGLRPVDAGNYISTGATNGIATITQITP 264
                V   +A+   A+LNL ++ +TAP+SGRIG      G  +  G    +A I Q+ P
Sbjct: 150 SAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGALVGQGEATLMARIQQLDP 209

Query: 265 IDVEFAIPQDRVPEVQDRLAQG----------AKLDATAFDRTRTRRLATGAFATLDNLV 314
           I ++F         ++  L  G          A+++ T F R       +G     D  V
Sbjct: 210 IYIDFTQSAADALRLRQALKDGALSADSQRLTAQVEGTDFQR-------SGELMFTDVSV 262

Query: 315 DTATGTVKAKARFSNADNTLFPNQFVNLRLLLRTVDSAVVVPVTALRHGPNGDYVYVLKD 374
           D  TG V  + RF NAD TL P  +V +R    T + A++VP  A++ G +G    ++  
Sbjct: 263 DRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQRGSDGQARVLVAT 322

Query: 375 DSTVAQRTVTRGEASVDNVAIMSGLTAGEQVVTEGGDRLKDGARVQTTVDRPAA 428
           +     R V  G        I  GL  G+QV+      L  G  V     + AA
Sbjct: 323 NGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPVAPAQKQTAA 376