Pairwise Alignments

Query, 497 a.a., Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system from Variovorax sp. SCN45

Subject, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

 Score =  370 bits (949), Expect = e-107
 Identities = 206/474 (43%), Positives = 291/474 (61%), Gaps = 13/474 (2%)

Query: 11  RAPGRLSLSALALAALLAGCSVGPLYHQPVTALPNNWKEQKAAEGWLPAAPADALDRGEW 70
           R  G   L A    ALL+ C++ P YH+P   L +   + K AEGW  A+P+DA+ RG W
Sbjct: 17  RGRGSRLLGAGLCVALLSACTLSPDYHRP--ELNSTAAQFKHAEGWTQASPSDAIARGAW 74

Query: 71  WKLFGDPTLDELASRVQVSNQNIAAAVANYANAQALVRGQRAALFPQVSLNGSGKRS--D 128
           W+++GD  L+ L   +  SNQ +A + A Y  AQALVR  RAALFP + L+ S  RS   
Sbjct: 75  WEIYGDAGLNALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSKNRSAQG 134

Query: 129 TGSTSPS---------NAFAATLDATWAPDVWGRLRESVNSASANAQASEADLASARLSA 179
           TGS+S S         N + A L  +W  D+WG+LRE++N+  A+A+AS ADLAS RLS 
Sbjct: 135 TGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLASIRLSQ 194

Query: 180 IGTMATNYLSLREADVEIGLLDQTIEGYERAYTITSNRYKAAIAAQSDVLQAQSQLATAR 239
              +  NYL LR  D +  LL+ T+  YER+  +  N+Y+A +A    V QA++QL + +
Sbjct: 195 QSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQ 254

Query: 240 ATRLTLVRNRATFEHAIAVLVGAVPADFSLPPAAWKQTVPGIPTGVPSTLLQRRPDIAAA 299
           A  + L+  RA FE+AIAVL+G  PADF+L  +     +P IP  +PS LL+RRPDIAAA
Sbjct: 255 ADLIDLIWQRAQFENAIAVLLGKAPADFALADSKAIPALPQIPVSLPSQLLERRPDIAAA 314

Query: 300 ERSVASANSQIGIARSAYFPSFNLNAAIGSSASRVGDLFSAPNSLWSLGLSAAQVVFDAG 359
           ER+V +AN+ IG++R+AYFP  +L+ + G S+S   +    PN  WS+G   A  +FDAG
Sbjct: 315 ERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAG 374

Query: 360 AISASVDAAKASYDASVARYRQTVLAAFQGVEDQLTAGATLAQQEGMYREASEAADKTEQ 419
             SA VD   A YD +VA+YRQTVL  F+ VE+ L        +  + +EA +AA ++ +
Sbjct: 375 KRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEALDAARESLR 434

Query: 420 ILLNQYRSALVAYTDVVTAQVAALNARRTLVQVQLNRQIAAVSLIQALGGGWQA 473
           +  NQYR+ L+ Y DVV  Q  AL+  R+++ +   R +A+V L+ ALGGGW A
Sbjct: 435 LTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDA 488