Pairwise Alignments

Query, 313 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

 Score =  237 bits (604), Expect = 3e-67
 Identities = 127/314 (40%), Positives = 189/314 (60%), Gaps = 4/314 (1%)

Query: 1   MLTFLGKRLLATLPVLLVVAVAIFMIVRLTPGDPAAVIGGNSATNEDLDRIRVQLGLTRP 60
           ML F+ ++L   +P LL+++V +F ++RL PGDPA ++ G+ A  + L  +R  LGL   
Sbjct: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADPQSLADMRHTLGLDHS 60

Query: 61  LWEQFAIWCNGVLHGDLGFSFFLNKPVTELIGQRMEPTLSLAGGTLLLAVAIALPLGTLA 120
           L  QF IW   VL  DLGFS    + V  LI  R   + ++    +L A  IA+P+G +A
Sbjct: 61  LVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIGLIA 120

Query: 121 AWRMGGWLDKAVMAFSVAGFSVPVFVVGYVLIYLLAMKLQWFPVQGYRRIADGVGPW--L 178
           AW+    LD  +++ +    S+P F +G +L++   ++L W PV GY  ++    PW  +
Sbjct: 121 AWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGY--VSFSQAPWQAM 178

Query: 179 HQLVLPCLTLAITYVALLSRVTRAAVSEALTEDFIRTARAKGITELEVLKHHALRNAAVP 238
             +VLP +TL +  V  ++R+ RA+  E L  ++I  ARAKG++E  VL  HAL NA  P
Sbjct: 179 SYMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHALPNAFAP 238

Query: 239 VVTVIGVSAALLLGGVVVTETVFAIPGLGQLTVDAVLNRDFPVLQGVVLFFAVVYVAVNL 298
             T++G+    LLGG+ V ETVF +PG+G+L VDA+  RD+PVLQG +L    +YV VNL
Sbjct: 239 TWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFIYVLVNL 298

Query: 299 LVDLSYLFIDPRIR 312
            VDL Y   DPR++
Sbjct: 299 CVDLLYPLFDPRVK 312