Pairwise Alignments

Query, 431 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 469 a.a., putative phage integrase from Pseudomonas putida KT2440

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 101/439 (23%), Positives = 165/439 (37%), Gaps = 56/439 (12%)

Query: 25  LRLQATATTRTWVYRFKSPIDGRMRQTKIGNWPAVNLANAAVAWEAVRAQRGAGADPVLK 84
           +R+     T  + Y FK  +DG   + ++G+WP  +LA      +  R     G  P L 
Sbjct: 31  VRVGVRGITVQFSYEFK--LDGARTRKRLGSWPKKSLAQIRSERDEARVLVTKGLHPTLA 88

Query: 85  RREAA-----------AVKKEPAATGYTVRQLCNDYLDGHILKHRQPKGVKETERLFNKR 133
            + A            A  +  AA   TV  L ++++   + +     G  E  R F K 
Sbjct: 89  AKAARIEAQAAIATTIAEAEREAAENKTVSDLFDEWIRDGVSRQ---DGNAELIRSFKKD 145

Query: 134 -LDALANKQAAAVTRADAFKLLEDQSNTPVS-TVQLRGELAGA---WDYALDAGRIPDTS 188
            L  +  K    +T  D   +L    +  ++ TV +R +  G    W       R   T 
Sbjct: 146 VLPLIGKKPLRNLTEKDLLAVLRSVKSRGLNRTVVIRSKDIGQMLRWAEKRKPWRGLMTD 205

Query: 189 PNWWRLVMRGRL------RSKGKVMQGKNIGVVKRVLSEAET-------GQLIRWLPHFT 235
            N   L+   +L        + +++    I  ++ VL   E        GQ    +    
Sbjct: 206 GNPADLIDVNKLLDHDYEEQRDRLLSPDEIRELRDVLERLENDYDELPAGQKYSGIRPVN 265

Query: 236 GLVDDALTMYLWTCTRGAEICAMEAKEITEEVDGLWWTVPKVKTKNARHALATDLRVPLV 295
             V  AL + L T  R  E+   E + +  E  G W+ +P   TK  +     D  V L 
Sbjct: 266 TRVQCALWICLSTLCRIGELLKAEWRYVDLE-KGTWF-IPAEATKGHK-GKRQDHHVFLS 322

Query: 296 GRAEAIVRR---RLADYPSGYLFPARDSGGKAHSEQAVVQTQVHYYQPYSKTNPK----- 347
             + A  +R      D P  + FP++D  G++H +   V   +   Q   K   K     
Sbjct: 323 AFSIAQFKRLQEETGDTP--FCFPSKD--GRSHVDTKTVSKLIGDRQCRFKNRSKPLAGR 378

Query: 348 HARPRLPVT-----HWAPHDLRRTSRTLLAAMGCPDSVAEALLGHVQPG--IQGTYNRHG 400
           H    L ++      W PHDLRRT  T++  +G    + +    H+  G  ++  Y  H 
Sbjct: 379 HHDDSLVLSKGTKGEWTPHDLRRTGATMMQELGVTLEIIDRCQNHLLGGSKVRRHYLHHD 438

Query: 401 YDRERRVWLSELDVKLEHL 419
           Y +E+      L  KLE +
Sbjct: 439 YAKEKTEAWRLLGEKLESI 457