Pairwise Alignments

Query, 542 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 540 a.a., AMP-binding domain protein from Pseudomonas putida KT2440

 Score =  259 bits (662), Expect = 2e-73
 Identities = 186/547 (34%), Positives = 270/547 (49%), Gaps = 44/547 (8%)

Query: 11  GLAPSSPRFHERISRVALGDV--IHRSARRFGERTALIEGEHRLSYRALDAASNRFAHHL 68
           GL P++      ++ VAL  +  I R+A  +G   A+I G  R +++       R A  L
Sbjct: 7   GLMPAA------VNHVALTPLSFIERTAAVYGNYPAVIHGAIRRNWQETYQRCRRLASAL 60

Query: 69  LDLGLEKGERVGMLCNNSIQMVVAMLGIQKAGLVWVPINTALGVEAIGYILSHAEVRHVV 128
              G+ +G+ V ++  N+  M+ A  G+   G V   +N  L  EAI ++L H E + ++
Sbjct: 61  AGRGIGRGDTVAVMLPNTPTMLEAHFGVPMTGAVLNTLNVRLDAEAIAFMLQHGEAKVLI 120

Query: 129 IDTALHAKPELRELLQATGVSPLLCVLDGDAPPPGIATVPQAIAQ----------GPETL 178
            D   HA  E    L      PL  V+D D P  G     +A++Q           PE  
Sbjct: 121 TDREFHAVIE--GALALLEHPPL--VVDVDDPEYGEG---RAVSQLDYEALLNEGDPEFA 173

Query: 179 PDVAIDSADLALIMYTSGTTGRQKGVMHSHASVHSVLLSNMVEWGSSPERADVWSSVLPL 238
            +   D      + YTSGTTG  KGV++ H   +   L N + W        +W+  LP+
Sbjct: 174 WEWPDDEWQAISLNYTSGTTGNPKGVVYHHRGAYLNALGNQMTWAMGHRPVYLWT--LPM 231

Query: 239 FHCGQHTVLMSALAVGGALVVLRGFDPGAVLAAIERHKITVMVGLPMMYGALLAHPQRAA 298
           FHC       +  A+ G  V LR  DP  +L  I  HK++ + G P++  AL+  P+ A 
Sbjct: 232 FHCNGWCYPWTITALAGTHVFLRRVDPQKILTLIREHKVSHLCGAPIVLNALVNMPEAAK 291

Query: 299 RDLSS-LRLCVYAMAPMSRTLLLRLLDEFCPNFALVSGQTEMYPGATIFEAH-------- 349
             +   ++  V   AP ++  ++  +++         G TE+Y   T+   H        
Sbjct: 292 AAIEHPVQAMVAGAAPPAK--VIGAVEQMGIKVTHTYGLTEVYGPVTVCAWHDEWDALSL 349

Query: 350 EQRRRFGSYWGVGTLVNEVAVMGDDGELLGT----DQVGEIVFRGPNVMLGYYKDPEATA 405
           E+R R  S  GV     +  ++ D   L       D +GEI  RG  VM GY K+PEATA
Sbjct: 350 EERARIKSRQGVRYPTLDGLMVADPQTLQPVPRDGDTLGEIFMRGNTVMKGYLKNPEATA 409

Query: 406 HAQRFGWHHSGDLGRMDEDGQLIFLDRLKDMVKSGGENVPSIKVEEVLLRHPGVMNAAVV 465
            A R GW H+GDL     DG +   DRLKD++ SGGEN+ +I+VE+ L +H  V+ AAVV
Sbjct: 410 EAFRGGWFHTGDLAVWHADGYIEIKDRLKDIIISGGENISTIEVEDALYKHSAVLEAAVV 469

Query: 466 GLPHEHWGEAITAFVTRRPDAPADFTEAVLTAHCKEHLGGFEVPKQIIFLPALPMTSTGK 525
             P E WGE   AFV  +P    D  EA +T+ C+EHL GF+VPK ++F   LP TSTGK
Sbjct: 470 ARPDEKWGETPCAFVALKP-GREDTREADITSWCREHLAGFKVPKTVVF-GELPKTSTGK 527

Query: 526 IQKFELR 532
           IQK+ LR
Sbjct: 528 IQKYVLR 534