Pairwise Alignments

Query, 164 a.a., TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter from Variovorax sp. SCN45

Subject, 194 a.a., D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) from Pseudomonas putida KT2440

 Score = 51.6 bits (122), Expect = 7e-12
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 11  WTTGASMVGACLMLVIASALGVFQIVTRFVLEQPAEWSEILIRVSLIWMVFLGIPMAFRQ 70
           W  G S++   L++      G+F    R+VL   + W E +  + ++   F+G   ++R 
Sbjct: 37  WIAGLSILAMTLII----PWGIF---ARYVLGTGSSWPEPVSILLMVVFTFVGAAASYRA 89

Query: 71  GAMVSVDVLYRWSPPRVRRVLDAVVSVAALTLMLIVLWWGWDYAMRGRVQSMAGLESISM 130
           GA ++V ++    PP  R+++  +V +  + + + + ++G    +    QS+A L  + +
Sbjct: 90  GAHMAVGMITDRLPPLQRQLVALLVQLLMIVVCVFMTYYGTRLCITTWNQSLASLPGVRV 149

Query: 131 VWAYLALPVGSVFCL 145
              Y  +PVG V  L
Sbjct: 150 GMTYAPIPVGGVLTL 164