Pairwise Alignments

Query, 631 a.a., no description from Variovorax sp. SCN45

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  338 bits (868), Expect = 3e-97
 Identities = 241/650 (37%), Positives = 328/650 (50%), Gaps = 43/650 (6%)

Query: 1   MSEAQWPSVRVEQAREMFFVQGRDPAPWIAPHISRSWQRSRPVDHQYIDPAPMALAL--- 57
           ++ A  P     +AR     +G  P   +   I  SW+RS       +    + L L   
Sbjct: 6   ITNAHDPLHESREARLKLASEGELPLGMLRDEIDASWRRSLGHGLDCLQGEQVGLGLEQG 65

Query: 58  --LRERREQSMRLLDCAQPELDGLAEHAIGNGCVVILSDASGLILEEIGSPDFLPKAERI 115
             LR   E++  L+D   PELD L     G   +VIL DA   +L   G    L +    
Sbjct: 66  HDLRLLLERNRLLIDAVTPELDYLVARQ-GKAGIVILGDAQANVLAIEGQKHVLQREGLR 124

Query: 116 ALQPGVEWSENNRGTNAIGTALAEREALMVLGGEHYLAQNGALGCAAAPIFTGRGELAGA 175
            L PG  WSE+ RGTNAIGTA+ E    ++  GEHYL +     C + P+   RGE+ G 
Sbjct: 125 DLHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGV 184

Query: 176 LDISGETVRVNTH-ALGLVRMAAQQVEHRML-LAEAQGHVLRFHARPALIGTAREGLMVI 233
           LDI+ E V      +L  + +AA  +E R+  L      VL FH+RP  + +A  GL+ +
Sbjct: 185 LDITREGVMAQPQDSLSTLMLAAGNIESRLFGLCHPDQLVLAFHSRPQYLNSAWHGLLAL 244

Query: 234 E-GGRIVAANRVALELFGRSWDGLLDLEARDFLGPNWPRMEHRRSLLTLPGGRQIATVME 292
              G ++AAN  A +L       L+   + D LG   P    R   L   G   + T   
Sbjct: 245 SLDGEVLAANDGACQLLQVPRHELIGRRSTDLLGERSPAFIAR---LWQGGVSSVQTAKG 301

Query: 293 RTSTRGGARPMARRADAPAATGAARPEADDILPLLDK--------------AVRVLNEGV 338
               R  A  + R      +T +++P      P LD               A + L  G+
Sbjct: 302 EFYFR--ALQLPRHGRVTPSTPSSKPALSKQSPALDALAGGDQRLARNLRMARQGLGNGL 359

Query: 339 SVLVNGETGSGKEVFSRRLHAASRRAAGPFVAVDCASLPETLIESELFGYDEGAFTGARR 398
            VL+ GETG+GKEV +R LH AS RA  PFVAV+CA++PE LIESELFGY EGAFTG+RR
Sbjct: 360 PVLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRR 419

Query: 399 KGMAGRIREAHGGVLFLDEIAEIPLALQTRLLRVLEERVVTPLGGGQGVAVDFDLVCATH 458
            GM GR+ +AHGG LFLDEI ++PLALQ RLLRVL+ER V PLG G    +D  L+CATH
Sbjct: 420 GGMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATH 479

Query: 459 GDLPALVKAGRFRADLMYRVAGFTVALPPLSRRADRHTLIARLFLESGGAAKHLRLESDA 518
            DL  LV+   FR DL YRV G ++ LP L  R D   +I  L  ++   A+ + L+   
Sbjct: 480 RDLKRLVQEQHFREDLFYRVNGVSLRLPALRERDDLAAIIQGLLDKAD--ARGVTLDPAL 537

Query: 519 LEALAAYRWPGNVRELRSTLRAVVALADTGDSVTAAALPAHLLGTHAAPTTDAATE--AA 576
              L  + WPGN+R+L   +R  +A+ + G+ V       HL        TD   +  A+
Sbjct: 538 TALLEGFDWPGNIRQLEMVVRTALAMREDGEQVLTL---DHL--------TDCLLDELAS 586

Query: 577 LAPQAGPLQAITRHAIDEALKACDHDVSKAARRLGVHRSTVYRHIARQRG 626
            A  +G L+      I  AL     +VS AA  LG+ R+T+YR + + RG
Sbjct: 587 SAAPSGSLKDSELEQIRGALARHQGNVSAAAAALGISRATLYRKLKQLRG 636