Pairwise Alignments

Query, 631 a.a., no description from Variovorax sp. SCN45

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  355 bits (910), Expect = e-102
 Identities = 248/648 (38%), Positives = 349/648 (53%), Gaps = 66/648 (10%)

Query: 31  PHISRSWQRSRPVDHQYIDPA----PMAL--ALLRERREQSMRLLDCAQPELDGLAEHAI 84
           P I+RSW R   ++  ++DPA    P+ L    L E RE+  ++L  A  E++ L +   
Sbjct: 28  PSIARSWLRC--LEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLS 85

Query: 85  GNGCVVILSDASGLILEEIGSPDFLPKAERIALQPGVEWSENNRGTNAIGTALAEREALM 144
           G G  V+L+DA G+IL  + +P      ER  L  G +WSE   GTN IGT L ER+AL 
Sbjct: 86  GAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALT 145

Query: 145 VLGGEHYLAQNGALGCAAAPIFTGRGELAGALDISGETVRVNT----HALGLVRMAAQQV 200
           +   EH+  ++  L C+A+P+F   G+L   LD+S     V+     H + LV ++A+ +
Sbjct: 146 IHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMI 205

Query: 201 EHRMLLAE-AQGHVLRFHARPALIGTAREGLMVIEG-GRIVAANRVALELFGRSWDGLLD 258
           E    L    Q  +LRFH +   +G   EGL+  +G GRI AAN+ AL L G    G+L 
Sbjct: 206 ESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLG 265

Query: 259 LEARDFLGPNWPRMEHRRSLLTLPGGRQI---ATVMER---TSTRGGARPMARRADAPAA 312
                F   +   M  R +    PGG  +    T+  R    S RG AR  A     PAA
Sbjct: 266 KPLECFFACSHDEMFSRAT----PGGSAVWPLRTLDGRQVFASLRGQAR--APVWSVPAA 319

Query: 313 TGAARPEADDILPLLDKA--------VRVLNEGVSVLVNGETGSGKEVFSRRLHAASRRA 364
                 E + ++ LLD A        VRV    V +L+ GETG GKE F++ +H AS R 
Sbjct: 320 QPRPAGEVEPLVCLLDPALQNDFRRSVRVFERDVPLLLRGETGCGKEAFAQAVHQASERR 379

Query: 365 AGPFVAVDCASLPETLIESELFGYDEGAFTGARRKGMAGRIREAHGGVLFLDEIAEIPLA 424
             PFVA++CAS+PE+LIESELFGY  G+FTGAR++GM G++ +A GG L LDEI ++PLA
Sbjct: 380 GKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTLLLDEIGDMPLA 439

Query: 425 LQTRLLRVLEERVVTPLGGGQGVAVDFDLVCATHGDLPALVKAGRFRADLMYRVAGFTVA 484
           LQTRLLRVLEER V P+ GG+  AVD  +V ATH DL   V+ G FR DL YR+ G  VA
Sbjct: 440 LQTRLLRVLEERQVVPI-GGEPQAVDVRIVSATHRDLLERVEQGSFREDLYYRLNGLEVA 498

Query: 485 LPPLSRRADRHTLIARLFLESGGAAKHLRLESDALEALAAYRWPGNVRELRSTLRAVVAL 544
           LP +  R+D+  L+  L L      + + +E  A +AL A+ WPGNVR++R+ LR +VAL
Sbjct: 499 LPAVRERSDKAQLLDFL-LRQETQGQWIDIEPRARQALLAFNWPGNVRQMRNVLRTLVAL 557

Query: 545 ADTGDSVTAAALPAHLLGT-------HAAPTTDAATEA---------ALAPQAGPLQAI- 587
            +    +T A LPA +  +         A  +D   E          A + ++G    I 
Sbjct: 558 CEDA-RITFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQARSHRSGGAAEIE 616

Query: 588 ------------TRHAIDEALKACDHDVSKAARRLGVHRSTVYRHIAR 623
                        R A+ E L+A    +++ A  LG+ R+T+YR + +
Sbjct: 617 GESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRK 664