Pairwise Alignments

Query, 774 a.a., ATPase, AAA family from Variovorax sp. SCN45

Subject, 764 a.a., AAA family ATPase Cdc48 from Sphingobium sp. HT1-2

 Score = 97.4 bits (241), Expect = 2e-24
 Identities = 129/479 (26%), Positives = 198/479 (41%), Gaps = 102/479 (21%)

Query: 309 EPGVNVLLYGPPGTGKTELAKVVAQAAGLELFEVEYADRDGNSLSGRDRYRSLQIAQVFL 368
           +P   V+L+GPPGTGKT LA+ VA  +  E F +   +  G++    ++    ++  +F 
Sbjct: 239 DPPKGVMLHGPPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEK----KLRDIFE 294

Query: 369 KGS--AQAALLFDEVEDVFPPISTEAAQFMARAEQIPAPTSGSVSG---KAWVNQILEA- 422
           + +  A + L  DE++ +                   AP  G V+G   K  V Q+L   
Sbjct: 295 EAAKAAPSILFIDEIDSI-------------------APKRGQVTGETEKRLVAQLLTLM 335

Query: 423 ---NPVPTLWV---TNRIEQIDPAFRR--RFAYHLELKSPPPGAREQLVKKTLEGVVVSE 474
               P   L V   TNR E ID A RR  RF   + +  P    R +++     G+ + +
Sbjct: 336 DGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPDERGRREILGIHTRGMPLGD 395

Query: 475 AFTAKLAERKGLTPAQIRTAVRFAGLAKTDDASVEALIERQLRNADLALGTLDTGRGERR 534
                LAE   +T   +   +     A T +A++E  + R +   +L  GT+     E  
Sbjct: 396 R--VDLAELARMTYGFVGADLA----ALTREAAIET-VRRLMPRLNLEEGTIPPDVLEDL 448

Query: 535 SVTTYD------------------------------LDMLN------VETRFEIPRIAQA 558
           SVT  D                              LD         VE   + P   + 
Sbjct: 449 SVTREDFLSAIKRVQPSAMREVMVQAPNIGWADIGGLDDAQMRLKEGVELPLKDPDAFRR 508

Query: 559 LKARGHGTLCFYGAPGTGKTALAEHIAKALGRPLLVKQASDLMSKYVGETEQNMAAMFRE 618
           L  R       YG PGTGKT LA+ +A+      +  ++SDL+SK+ GE+EQ +A +F  
Sbjct: 509 LGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANFIATKSSDLLSKWYGESEQQIARLFAR 568

Query: 619 AEN-EKAVLLLDEADSFLQDRRGAQRTYEVTE--VNEML---QGMERFNGVFVC-TTNLL 671
           A      V+ +DE DS +  R G      VTE  VN +L    G+E    V V   TN  
Sbjct: 569 ARQVAPTVIFIDELDSLVPARGGGLGEPAVTERVVNTILAEMDGLEELQSVVVIGATNRP 628

Query: 672 DRLDQAALRRFTF-KIKFMP---------LTAVQRERMFVT-----EALAGDAERITSA 715
             +D A LR   F ++ ++P         + A+  ++M +      + LA   ER T A
Sbjct: 629 TLVDPALLRPGRFDELIYVPVPDQAGRKRILAIHTKKMPLASDVDLDQLAARTERFTGA 687



 Score = 61.2 bits (147), Expect = 2e-13
 Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 22/230 (9%)

Query: 530 RGERRSVTTYD--------LDMLN--VETRFEIPRIAQALKARGHGTLCFYGAPGTGKTA 579
           R  RR+  TYD        +D L   VE     P + + L       +  +G PGTGKT 
Sbjct: 197 RESRRADVTYDDVGGMAETIDQLREMVELPLRYPELFERLGVDPPKGVMLHGPPGTGKTR 256

Query: 580 LAEHIAKALGRPLLVKQASDLMSKYVGETEQNMAAMFRE-AENEKAVLLLDEADSFLQDR 638
           LA  +A        +    ++M    GE+E+ +  +F E A+   ++L +DE DS    R
Sbjct: 257 LARAVANESEAEFFLINGPEIMGSAYGESEKKLRDIFEEAAKAAPSILFIDEIDSIAPKR 316

Query: 639 ---RGAQRTYEVTEVNEMLQGME-RFNGVFVCTTNLLDRLDQAALRRFTFKIKFMPLTAV 694
               G      V ++  ++ G+E R N V +  TN  + +D+A  R   F  + +     
Sbjct: 317 GQVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRRPGRFDREIVVGVPD 376

Query: 695 QRERMFVTEALAGDAERITSAIRARLAQLTQLCPG----DFAAVKRQTDI 740
           +R R    E L      +    R  LA+L ++  G    D AA+ R+  I
Sbjct: 377 ERGR---REILGIHTRGMPLGDRVDLAELARMTYGFVGADLAALTREAAI 423



 Score = 52.8 bits (125), Expect = 7e-11
 Identities = 62/210 (29%), Positives = 89/210 (42%), Gaps = 20/210 (9%)

Query: 310 PGVNVLLYGPPGTGKTELAKVVAQAAGLELFEVEYADRDGNSLSGRDRYRSLQIAQVFLK 369
           P    LLYGPPGTGKT LAK VA+ A         A +  + LS        QIA++F +
Sbjct: 513 PAKGFLLYGPPGTGKTLLAKAVAREAQANFI----ATKSSDLLSKWYGESEQQIARLFAR 568

Query: 370 GS--AQAALLFDEVEDVFPPISTEAAQFMARAEQIPAPTSGSVSG-KAWVNQILEANPVP 426
               A   +  DE++ + P       +        PA T   V+   A ++ + E   V 
Sbjct: 569 ARQVAPTVIFIDELDSLVPARGGGLGE--------PAVTERVVNTILAEMDGLEELQSVV 620

Query: 427 TLWVTNRIEQIDPAFRRRFAYHLELKSPPP---GAREQLVKKTLEGVVVSEAFTAKLAER 483
            +  TNR   +DPA  R   +   +  P P   G +  L   T +  + S+    +LA R
Sbjct: 621 VIGATNRPTLVDPALLRPGRFDELIYVPVPDQAGRKRILAIHTKKMPLASDVDLDQLAAR 680

Query: 484 -KGLTPAQIRTAVRFAGL-AKTDDASVEAL 511
            +  T A +    R AGL A      VEA+
Sbjct: 681 TERFTGADLEDLSRRAGLIALRQSLQVEAV 710