Pairwise Alignments

Query, 591 a.a., ATP-dependent DNA helicase RecQ from Variovorax sp. SCN45

Subject, 708 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas simiae WCS417

 Score =  585 bits (1507), Expect = e-171
 Identities = 306/588 (52%), Positives = 403/588 (68%), Gaps = 23/588 (3%)

Query: 1   VVGGGDALVLMPTGGGKSLCYQIPAIARQRAGHGVAIVVSPLIALMHDQVGALHEAGVSA 60
           V  GGDALVLMPTGGGKSLC+Q+PA+ R    +G+A+VVSPLIALM DQV  L E GV+A
Sbjct: 29  VASGGDALVLMPTGGGKSLCFQVPALLR----NGLAVVVSPLIALMDDQVATLEELGVAA 84

Query: 61  AFLNSTLDWEETQDVERRMLRGEITLLYAAPERVNTPRFLSQLDSLKERGKLSLFAIDEA 120
           A LNSTL  E+ +D+  R+ RGE+ +LY APER+  PR L+ L SL+    ++LFAIDEA
Sbjct: 85  ASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQPRMLAFLQSLE----IALFAIDEA 140

Query: 121 HCVSQWGHDFRPEYRALTVLHERYAGVPRIALTATADDLTRADIVERLQLEEARQFVSSF 180
           HCVSQWGHDFR EY  L  L E +  VPRIALTATAD  TR +IVERL L+ A +F+SSF
Sbjct: 141 HCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRTREEIVERLHLQNAERFLSSF 200

Query: 181 DRPNIRYTIVEKKDATTQLLRFIEREHEGDAGVVYCQSRKRVEDVAVTLRDAGINALPYH 240
           DR NI Y IV K+    QLL F+  E   DAG+VYC SRK+V++VA  L + G  ALPYH
Sbjct: 201 DRSNIFYRIVPKEQPRKQLLAFLS-ERRSDAGIVYCLSRKKVDEVAAFLCEQGYPALPYH 259

Query: 241 AGLDAAVRQKHQDRFLREEGIVMVATIAFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRA 300
           AGL   +R  HQ RFL EEG++MVATIAFGMGIDK +VRFV H+D+PK++E YYQETGRA
Sbjct: 260 AGLPNDLRAYHQKRFLNEEGLIMVATIAFGMGIDKSNVRFVAHMDLPKSLEAYYQETGRA 319

Query: 301 GRDGGPADAWMAYGLQDVVNQRRMIDESPAGEEFKQVMRGKLDALLSLAEASDCRRVRLL 360
           GRDG PADAWM YGLQDVV  ++M+  S   E  K++ + KLDA+LSL E + CRR  LL
Sbjct: 320 GRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHKLDAMLSLCEETRCRRQTLL 379

Query: 361 GYFGE-KSTPCGNCDNCLNPPQVWDGTDAARKLLSTIYRVQQLSGISFGAGHIMDILRGK 419
            YF E    PCG+CDNC++  Q WD T+ AR+ LS IYR    +G  +G GH++D+L GK
Sbjct: 380 AYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYR----TGQRYGVGHLVDVLLGK 435

Query: 420 ATEKVKQFGHERVSTFGIGAEFSEVALRGVLRQLIATGALAVDAEAFNTLKLTEGSRAVL 479
             EKV+ FGHE++S +G+G   +E   R + RQ++A G + +D E F  L+L +  R +L
Sbjct: 436 DNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIEGFGGLRLNDSCRPLL 495

Query: 480 RGEAQVTLRESVSSPAERSKSRREKTVKGAPSPAAAKLDDTGKKRFEALKAWRAEVAKEH 539
           +GE  + LR  +         + + T K + S A+  +    ++++EAL+  R ++A+EH
Sbjct: 496 KGEVSLELRRDL---------KPQTTAKSSTSQASQLVRGEEREQWEALRTLRRKLAQEH 546

Query: 540 NLPAYVIFHDATLAAIAERAPATLEDLQGISGIGTKKLEAYGSEVLRV 587
           ++P YVIF D+TL  +    P ++ ++  +SG+G +KLE YG   L V
Sbjct: 547 SVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEV 594